Recent Activity in Expanding Populations and Purifying Selection Have Shaped Transposable Element Landscapes across Natural Accessions of the Mediterranean Grass Brachypodium distachyon
出版年份 2017 全文链接
标题
Recent Activity in Expanding Populations and Purifying Selection Have Shaped Transposable Element Landscapes across Natural Accessions of the Mediterranean Grass Brachypodium distachyon
作者
关键词
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出版物
Genome Biology and Evolution
Volume 10, Issue 1, Pages 304-318
出版商
Oxford University Press (OUP)
发表日期
2017-12-20
DOI
10.1093/gbe/evx276
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- On the post-glacial spread of human commensal Arabidopsis thaliana
- (2017) Cheng-Ruei Lee et al. Nature Communications
- Genome-wide characterization of non-reference transposons in crops suggests non-random insertion
- (2016) Bin Wei et al. BMC GENOMICS
- 1,135 Genomes Reveal the Global Pattern of Polymorphism in Arabidopsis thaliana
- (2016) Carlos Alonso-Blanco et al. CELL
- DNA methylation profiles of diverse Brachypodium distachyon align with underlying genetic diversity
- (2016) Steven R. Eichten et al. GENOME RESEARCH
- The industrial melanism mutation in British peppered moths is a transposable element
- (2016) Arjen E. van’t Hof et al. NATURE
- Robust and scalable inference of population history from hundreds of unphased whole genomes
- (2016) Jonathan Terhorst et al. NATURE GENETICS
- Genetic drift, selection and the evolution of the mutation rate
- (2016) Michael Lynch et al. NATURE REVIEWS GENETICS
- The First Rule of Plant Transposable Element Silencing: Location, Location, Location
- (2016) Meredith J. Sigman et al. PLANT CELL
- Adaptation to Global Change: A Transposable Element–Epigenetics Perspective
- (2016) Olivier Rey et al. TRENDS IN ECOLOGY & EVOLUTION
- Multiple Independent Retroelement Insertions in the Promoter of a Stress Response Gene Have Variable Molecular and Functional Effects in Drosophila
- (2016) Miriam Merenciano et al. PLoS Genetics
- Brachypodium distachyonandSetaria viridis: Model Genetic Systems for the Grasses
- (2015) Thomas P. Brutnell et al. Annual Review of Plant Biology
- Sambamba: fast processing of NGS alignment formats
- (2015) Artem Tarasov et al. BIOINFORMATICS
- On the importance of being structured: instantaneous coalescence rates and human evolution—lessons for ancestral population size inference?
- (2015) O Mazet et al. HEREDITY
- Transposon Insertions, Structural Variations, and SNPs Contribute to the Evolution of the Melon Genome
- (2015) Walter Sanseverino et al. MOLECULAR BIOLOGY AND EVOLUTION
- Evolution of the mating system in colonizing plants
- (2015) John R. Pannell MOLECULAR ECOLOGY
- Tempo and Mode of Transposable Element Activity in Drosophila
- (2015) Robert Kofler et al. PLoS Genetics
- Transposable Elements Contribute to Activation of Maize Genes in Response to Abiotic Stress
- (2015) Irina Makarevitch et al. PLoS Genetics
- Population Genomics of Transposable Elements inDrosophila
- (2014) Maite G. Barrón et al. Annual Review of Genetics
- Targeting environmental adaptation in the monocot model Brachypodium distachyon: a multi-faceted approach
- (2014) Matteo Dell’Acqua et al. BMC GENOMICS
- SNPhylo: a pipeline to construct a phylogenetic tree from huge SNP data
- (2014) Tae-Ho Lee et al. BMC GENOMICS
- The bright side of transposons in crop evolution
- (2014) C. Vitte et al. Briefings in Functional Genomics
- Widespread and frequent horizontal transfers of transposable elements in plants
- (2014) M. El Baidouri et al. GENOME RESEARCH
- PopGenome: An Efficient Swiss Army Knife for Population Genomic Analyses in R
- (2014) Bastian Pfeifer et al. MOLECULAR BIOLOGY AND EVOLUTION
- TEMP: a computational method for analyzing transposable element polymorphism in populations
- (2014) Jiali Zhuang et al. NUCLEIC ACIDS RESEARCH
- Patterns and processes in plant phylogeography in the Mediterranean Basin. A review
- (2014) Gonzalo Nieto Feliner PERSPECTIVES IN PLANT ECOLOGY EVOLUTION AND SYSTEMATICS
- Transposable element islands facilitate adaptation to novel environments in an invasive species
- (2014) Lukas Schrader et al. Nature Communications
- An Age-of-Allele Test of Neutrality for Transposable Element Insertions
- (2013) J. P. Blumenstiel et al. GENETICS
- Comparative Genomic Paleontology across Plant Kingdom Reveals the Dynamics of TE-Driven Genome Evolution
- (2013) Moaine El Baidouri et al. Genome Biology and Evolution
- Abundance and Distribution of Transposable Elements in Two Drosophila QTL Mapping Resources
- (2013) Julie M. Cridland et al. MOLECULAR BIOLOGY AND EVOLUTION
- The impact of transposable elements in environmental adaptation
- (2013) Elena Casacuberta et al. MOLECULAR ECOLOGY
- Transposable elements and microevolutionary changes in natural populations
- (2013) Georgi Bonchev et al. Molecular Ecology Resources
- A high-performance computing toolset for relatedness and principal component analysis of SNP data
- (2012) X. Zheng et al. BIOINFORMATICS
- Genome-Wide Characterization of Nonreference Transposons Reveals Evolutionary Propensities of Transposons in Soybean
- (2012) Z. Tian et al. PLANT CELL
- Sequencing of Pooled DNA Samples (Pool-Seq) Uncovers Complex Dynamics of Transposable Element Insertions in Drosophila melanogaster
- (2012) Robert Kofler et al. PLoS Genetics
- Climate Relicts: Past, Present, Future
- (2011) Arndt Hampe et al. Annual Review of Ecology Evolution and Systematics
- The variant call format and VCFtools
- (2011) P. Danecek et al. BIOINFORMATICS
- Genome Size and Transposable Element Content as Determined by High-Throughput Sequencing in Maize and Zea luxurians
- (2011) Maud I. Tenaillon et al. Genome Biology and Evolution
- Miniature Inverted-Repeat Transposable Elements (MITEs) Have Been Accumulated through Amplification Bursts and Play Important Roles in Gene Expression and Species Diversity in Oryza sativa
- (2011) C. Lu et al. MOLECULAR BIOLOGY AND EVOLUTION
- A Comprehensive Map of Mobile Element Insertion Polymorphisms in Humans
- (2011) Chip Stewart et al. PLoS Genetics
- Genome sequencing and analysis of the model grass Brachypodium distachyon
- (2010) John P. Vogel et al. NATURE
- A triptych of the evolution of plant transposable elements
- (2010) Maud I. Tenaillon et al. TRENDS IN PLANT SCIENCE
- Genome-Wide Patterns of Adaptation to Temperate Environments Associated with Transposable Elements in Drosophila
- (2010) Josefa González et al. PLoS Genetics
- Development of SSR markers and analysis of diversity in Turkish populations of Brachypodium distachyon
- (2009) John P Vogel et al. BMC PLANT BIOLOGY
- Epigenetic silencing of transposable elements: A trade-off between reduced transposition and deleterious effects on neighboring gene expression
- (2009) J. D. Hollister et al. GENOME RESEARCH
- Fast model-based estimation of ancestry in unrelated individuals
- (2009) D. H. Alexander et al. GENOME RESEARCH
- Epigenetic Regulation of Transposable Elements in Plants
- (2008) Damon Lisch Annual Review of Plant Biology
- Genomic Consequences of Outcrossing and Selfing in Plants
- (2008) Stephen I. Wright et al. INTERNATIONAL JOURNAL OF PLANT SCIENCES
- Transposable elements and the evolution of regulatory networks
- (2008) Cédric Feschotte NATURE REVIEWS GENETICS
- Demography and weak selection drive patterns of transposable element diversity in natural populations of Arabidopsis lyrata
- (2008) S. Lockton et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- A Retrotransposon-Mediated Gene Duplication Underlies Morphological Variation of Tomato Fruit
- (2008) H. Xiao et al. SCIENCE
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