Different contributions of local- and distant-regulatory changes to transcriptome divergence between stickleback ecotypes
出版年份 2017 全文链接
标题
Different contributions of local- and distant-regulatory changes to transcriptome divergence between stickleback ecotypes
作者
关键词
-
出版物
EVOLUTION
Volume 71, Issue 3, Pages 565-581
出版商
Wiley
发表日期
2017-01-11
DOI
10.1111/evo.13175
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- Evolving New Skeletal Traits by cis -Regulatory Changes in Bone Morphogenetic Proteins
- (2016) Vahan B. Indjeian et al. CELL
- Genetic basis for variation in salinity tolerance between stickleback ecotypes
- (2016) Makoto Kusakabe et al. MOLECULAR ECOLOGY
- Sequence-based Association Analysis Reveals an MGST1 eQTL with Pleiotropic Effects on Bovine Milk Composition
- (2016) Mathew D. Littlejohn et al. Scientific Reports
- Constraints Evolve: Context Dependency of Gene Effects Allows Evolution of Pleiotropy
- (2015) Mihaela Pavličev et al. Annual Review of Ecology Evolution and Systematics
- Linked selection and recombination rate variation drive the evolution of the genomic landscape of differentiation across the speciation continuum ofFicedulaflycatchers
- (2015) Reto Burri et al. GENOME RESEARCH
- Purifying Selection Maintains Dosage-Sensitive Genes during Degeneration of the Threespine Stickleback Y Chromosome
- (2015) Michael A. White et al. MOLECULAR BIOLOGY AND EVOLUTION
- Ten years of transcriptomics in wild populations: what have we learned about their ecology and evolution?
- (2015) Mariano Alvarez et al. MOLECULAR ECOLOGY
- The role of regulatory variation in complex traits and disease
- (2015) Frank W. Albert et al. NATURE REVIEWS GENETICS
- Parallel Gene Expression Differences between Low and High Latitude Populations of Drosophila melanogaster and D. simulans
- (2015) Li Zhao et al. PLoS Genetics
- The genetic architecture of gene expression levels in wild baboons
- (2015) Jenny Tung et al. eLife
- Contrasting Patterns of Phenotype-Dependent Parasitism within and among Populations of Threespine Stickleback
- (2014) William E. Stutz et al. AMERICAN NATURALIST
- Trimmomatic: a flexible trimmer for Illumina sequence data
- (2014) Anthony M. Bolger et al. BIOINFORMATICS
- Relaxin-related gene expression differs between anadromous and stream-resident stickleback (Gasterosteus aculeatus) following seawater transfer
- (2014) Makoto Kusakabe et al. GENERAL AND COMPARATIVE ENDOCRINOLOGY
- Genetic Architecture of Ethanol-Responsive Transcriptome Variation in Saccharomyces cerevisiae Strains
- (2014) Jeffrey A. Lewis et al. GENETICS
- Modular Skeletal Evolution in Sticklebacks Is Controlled by Additive and Clustered Quantitative Trait Loci
- (2014) Craig T. Miller et al. GENETICS
- The Evolution and Adaptive Potential of Transcriptional Variation in Sticklebacks—Signatures of Selection and Widespread Heritability
- (2014) Erica H. Leder et al. MOLECULAR BIOLOGY AND EVOLUTION
- Reanalysis suggests that genomic islands of speciation are due to reduced diversity, not reduced gene flow
- (2014) Tami E. Cruickshank et al. MOLECULAR ECOLOGY
- Extensivecis-Regulatory Variation Robust to Environmental Perturbation inArabidopsis
- (2014) Francisco A. Cubillos et al. PLANT CELL
- Evolved tooth gain in sticklebacks is associated with a cis-regulatory allele of Bmp6
- (2014) P. A. Cleves et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Stick Insect Genomes Reveal Natural Selection's Role in Parallel Speciation
- (2014) V. Soria-Carrasco et al. SCIENCE
- Fast Evolution from Precast Bricks: Genomics of Young Freshwater Populations of Threespine Stickleback Gasterosteus aculeatus
- (2014) Nadezhda V. Terekhanova et al. PLoS Genetics
- Sex Chromosome Turnover Contributes to Genomic Divergence between Incipient Stickleback Species
- (2014) Kohta Yoshida et al. PLoS Genetics
- A survey of tools for variant analysis of next-generation genome sequencing data
- (2013) S. Pabinger et al. BRIEFINGS IN BIOINFORMATICS
- Evolution of the Eye Transcriptome under Constant Darkness in Sinocyclocheilus Cavefish
- (2013) Fanwei Meng et al. MOLECULAR BIOLOGY AND EVOLUTION
- Shared selective pressure and local genomic landscape lead to repeatable patterns of genomic divergence in sunflowers
- (2013) Sebastien Renaut et al. MOLECULAR ECOLOGY
- Recombination in the threespine stickleback genome-patterns and consequences
- (2013) Marius Roesti et al. MOLECULAR ECOLOGY
- Expression Quantitative Trait Locus Mapping across Water Availability Environments Reveals Contrasting Associations with Genomic Features in Arabidopsis
- (2013) D. B. Lowry et al. PLANT CELL
- Genomic rearrangements and the evolution of clusters of locally adaptive loci
- (2013) S. Yeaman PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Environmental Dependence of Genetic Constraint
- (2013) Marjon G. J. de Vos et al. PLoS Genetics
- Uninformative polymorphisms bias genome scans for signatures of selection
- (2012) Marius Roesti et al. BMC EVOLUTIONARY BIOLOGY
- Expression variation in connected recombinant populations of Arabidopsis thaliana highlights distinct transcriptome architectures
- (2012) Francisco A Cubillos et al. BMC GENOMICS
- Physiological and genetic basis for variation in migratory behavior in the three-spined stickleback, Gasterosteus aculeatus
- (2012) Jun Kitano et al. ICHTHYOLOGICAL RESEARCH
- Exploring local immunological adaptation of two stickleback ecotypes by experimental infection and transcriptome-wide digital gene expression analysis
- (2012) Tobias L. Lenz et al. MOLECULAR ECOLOGY
- Population genomics based on low coverage sequencing: how low should we go?
- (2012) C. Alex Buerkle et al. MOLECULAR ECOLOGY
- Genetic trade-offs and conditional neutrality contribute to local adaptation
- (2012) JILL T. ANDERSON et al. MOLECULAR ECOLOGY
- The genomic basis of adaptive evolution in threespine sticklebacks
- (2012) Felicity C. Jones et al. NATURE
- Hippocampal Adult Neurogenesis Is Maintained by Neil3-Dependent Repair of Oxidative DNA Lesions in Neural Progenitor Cells
- (2012) Christine Elisabeth Regnell et al. Cell Reports
- Karyotype Differentiation between Two Stickleback Species (Gasterosteidae)
- (2011) J.R. Urton et al. CYTOGENETIC AND GENOME RESEARCH
- Hot Spots of Inorganic Nitrogen Availability in an Alpine-Subalpine Ecosystem, Colorado Front Range
- (2011) Anthony Darrouzet-Nardi et al. ECOSYSTEMS
- Multipoint maximum likelihood mapping in a full-sib family of an outbreeding species
- (2011) J. W. VAN OOIJEN Genetics Research
- Morphological evolution caused by many subtle-effect substitutions in regulatory DNA
- (2011) Nicolás Frankel et al. NATURE
- g:Profiler—a web server for functional interpretation of gene lists (2011 update)
- (2011) Jüri Reimand et al. NUCLEIC ACIDS RESEARCH
- Divergence in Sex Steroid Hormone Signaling between Sympatric Species of Japanese Threespine Stickleback
- (2011) Jun Kitano et al. PLoS One
- The Developmental Role of Agouti in Color Pattern Evolution
- (2011) M. Manceau et al. SCIENCE
- The role of gene expression in ecological speciation
- (2010) Scott A. Pavey et al. Annals of the New York Academy of Sciences
- Fast and SNP-tolerant detection of complex variants and splicing in short reads
- (2010) T. D. Wu et al. BIOINFORMATICS
- Adaptive Divergence in the Thyroid Hormone Signaling Pathway in the Stickleback Radiation
- (2010) Jun Kitano et al. CURRENT BIOLOGY
- The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
- (2010) A. McKenna et al. GENOME RESEARCH
- On the origin of species: insights from the ecological genomics of lake whitefish
- (2010) L. Bernatchez et al. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Sympatric and Allopatric Divergence of MHC Genes in Threespine Stickleback
- (2010) Blake Matthews et al. PLoS One
- Population Genomics of Parallel Adaptation in Threespine Stickleback using Sequenced RAD Tags
- (2010) Paul A. Hohenlohe et al. PLoS Genetics
- Inherited Variation in Gene Expression
- (2009) Daniel A. Skelly et al. Annual Review of Genomics and Human Genetics
- Phenotypic novelty in experimental hybrids is predicted by the genetic distance between species of cichlid fish
- (2009) Rike B Stelkens et al. BMC EVOLUTIONARY BIOLOGY
- Estimating accuracy of RNA-Seq and microarrays with proteomics
- (2009) Xing Fu et al. BMC GENOMICS
- The Genetic Signature of Conditional Expression
- (2009) J. D. Van Dyken et al. GENETICS
- Islands of speciation or mirages in the desert? Examining the role of restricted recombination in maintaining species
- (2009) M A F Noor et al. HEREDITY
- Is Genetic Evolution Predictable?
- (2009) D. L. Stern et al. SCIENCE
- A Yeast Hybrid Provides Insight into the Evolution of Gene Expression Regulation
- (2009) I. Tirosh et al. SCIENCE
- Adaptive Evolution of Pelvic Reduction in Sticklebacks by Recurrent Deletion of a Pitx1 Enhancer
- (2009) Y. F. Chan et al. SCIENCE
- Reverse Evolution of Armor Plates in the Threespine Stickleback
- (2008) Jun Kitano et al. CURRENT BIOLOGY
- Parasite burdens differ between sympatric three-spined stickleback species
- (2008) Andrew D. C. MacColl ECOGRAPHY
- RESURRECTING THE ROLE OF TRANSCRIPTION FACTOR CHANGE IN DEVELOPMENTAL EVOLUTION
- (2008) Vincent J. Lynch et al. EVOLUTION
- RNA-seq: An assessment of technical reproducibility and comparison with gene expression arrays
- (2008) J. C. Marioni et al. GENOME RESEARCH
- Gene Expression Levels Are a Target of Recent Natural Selection in the Human Genome
- (2008) S. Kudaravalli et al. MOLECULAR BIOLOGY AND EVOLUTION
- Regulatory changes underlying expression differences within and between Drosophila species
- (2008) Patricia J Wittkopp et al. NATURE GENETICS
- Histamine in the Nervous System
- (2008) Helmut L. Haas et al. PHYSIOLOGICAL REVIEWS
- Dominance and the evolutionary accumulation of cis- and trans-effects on gene expression
- (2008) B. Lemos et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Revealing the architecture of gene regulation: the promise of eQTL studies
- (2008) Yoav Gilad et al. TRENDS IN GENETICS
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