Molecular characterisation of human Shiga toxin-producing Escherichia coli O26 strains: results of an outbreak investigation, Romania, February to August 2016

Estimating true incidence of O157 and non-O157 Shiga toxin-producing Escherichia coli illness in Germany based on notification data of haemolytic uraemic syndrome

(2016) A. KUEHNE et al.   EPIDEMIOLOGY AND INFECTION

Community-wide outbreak of haemolytic uraemic syndrome associated with Shiga toxin 2-producingEscherichia coliO26:H11 in southern Italy, summer 2013

(2016) Cinzia Germinario et al.   Eurosurveillance

Early findings in outbreak of haemolytic uraemic syndrome among young children caused by Shiga toxin-producingEscherichia coli, Romania, January to February 2016

(2016) Emilie Peron et al.   Eurosurveillance

kSNP3.0: SNP detection and phylogenetic analysis of genomes without genome alignment or reference genome: Table 1

(2015) Shea N Gardner et al.   BIOINFORMATICS

Shiga toxin-producing escherichia coli infections in Norway, 1992–2012: characterization of isolates and identification of risk factors for haemolytic uremic syndrome

(2015) Lin T. Brandal et al.   BMC INFECTIOUS DISEASES

Rapid and Easy In Silico Serotyping of Escherichia coli Isolates by Use of Whole-Genome Sequencing Data

(2015) Katrine G. Joensen et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Characterization of the Shiga toxin-producingEscherichia coliO26 isolated from human in Poland between 1996 and 2014

(2015) A. Januszkiewicz et al.   LETTERS IN APPLIED MICROBIOLOGY

Defining pathogenic verocytotoxin-producing Escherichia coli (VTEC) from cases of human infection in the European Union, 2007–2010

(2014) W. MESSENS et al.   EPIDEMIOLOGY AND INFECTION

The utility and public health implications of PCR and whole genome sequencing for the detection and investigation of an outbreak of Shiga toxin-producing Escherichia coli serogroup O26:H11

(2014) T. J. DALLMAN et al.   EPIDEMIOLOGY AND INFECTION

Outbreaks of non-O157 Shiga toxin-producing Escherichia coli infection: USA

(2014) R. E. LUNA-GIERKE et al.   EPIDEMIOLOGY AND INFECTION

Real-Time Whole-Genome Sequencing for Routine Typing, Surveillance, and Outbreak Detection of Verotoxigenic Escherichia coli

(2014) K. G. Joensen et al.   JOURNAL OF CLINICAL MICROBIOLOGY

SRST2: Rapid genomic surveillance for public health and hospital microbiology labs

(2014) Michael Inouye et al.   Genome Medicine

Enterohemorrhagic Escherichia coli O26:H11/H−: A New Virulent Clone Emerges in Europe

(2013) Martina Bielaszewska et al.   CLINICAL INFECTIOUS DISEASES

Enterohemorrhagic Escherichia coli as Causes of Hemolytic Uremic Syndrome in the Czech Republic

(2013) Monika Marejková et al.   PLoS One

Incidence and Virulence Determinants of Verocytotoxin-Producing Escherichia coli Infections in the Brussels-Capital Region, Belgium, in 2008-2010

(2012) G. Buvens et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Multicenter Evaluation of a Sequence-Based Protocol for Subtyping Shiga Toxins and Standardizing Stx Nomenclature

(2012) F. Scheutz et al.   JOURNAL OF CLINICAL MICROBIOLOGY

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

The ClermontEscherichia coliphylo-typing method revisited: improvement of specificity and detection of new phylo-groups

(2012) Olivier Clermont et al.   Environmental Microbiology Reports

The complete DNA sequence and analysis of the virulence plasmid and of five additional plasmids carried by Shiga toxin-producing Escherichia coli O26:H11 strain H30☆

(2011) Pina M. Fratamico et al.   INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY