Deterministic influences exceed dispersal effects on hydrologically-connected microbiomes

The interconnected rhizosphere: High network complexity dominates rhizosphere assemblages

(2016) Shengjing Shi et al.   ECOLOGY LETTERS

Polysaccharide utilisation loci of Bacteroidetes from two contrasting open ocean sites in the North Atlantic

(2016) Christin M. Bennke et al.   ENVIRONMENTAL MICROBIOLOGY

Ubiquitous Gammaproteobacteria dominate dark carbon fixation in coastal sediments

(2016) Stefan Dyksma et al.   ISME Journal

The ecology and biogeochemistry of stream biofilms

(2016) Tom J. Battin et al.   NATURE REVIEWS MICROBIOLOGY

Network analysis reveals functional redundancy and keystone taxa amongst bacterial and fungal communities during organic matter decomposition in an arable soil

(2016) Samiran Banerjee et al.   SOIL BIOLOGY & BIOCHEMISTRY

Groundwater–surface water mixing shifts ecological assembly processes and stimulates organic carbon turnover

(2016) James C. Stegen et al.   Nature Communications

Coupling Spatiotemporal Community Assembly Processes to Changes in Microbial Metabolism

(2016) Emily B. Graham et al.   Frontiers in Microbiology

Microbes as Engines of Ecosystem Function: When Does Community Structure Enhance Predictions of Ecosystem Processes?

(2016) Emily B. Graham et al.   Frontiers in Microbiology

Attached biofilms and suspended aggregates are distinct microbial lifestyles emanating from differing hydraulics

(2016) Robert Niederdorfer et al.   Nature Microbiology

Metagenomic analysis of a high carbon dioxide subsurface microbial community populated by chemolithoautotrophs and bacteria and archaea from candidate phyla

(2015) Joanne B. Emerson et al.   ENVIRONMENTAL MICROBIOLOGY

Determinants of bacterial communities in Canadian agroforestry systems

(2015) Samiran Banerjee et al.   ENVIRONMENTAL MICROBIOLOGY

Disentangling mechanisms that mediate the balance between stochastic and deterministic processes in microbial succession

(2015) Francisco Dini-Andreote et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Four-dimensional electrical conductivity monitoring of stage-driven river water intrusion: Accounting for water table effects using a transient mesh boundary and conditional inversion constraints

(2015) Tim Johnson et al.   WATER RESOURCES RESEARCH

Nutrient requirements and growth physiology of the photoheterotrophic Acidobacterium, Chloracidobacterium thermophilum

(2015) Marcus Tank et al.   Frontiers in Microbiology

The Cultivable Surface Microbiota of the Brown Alga Ascophyllum nodosum is Enriched in Macroalgal-Polysaccharide-Degrading Bacteria

(2015) Marjolaine Martin et al.   Frontiers in Microbiology

Microbial responses to changes in flow status in temporary headwater streams: a cross-system comparison

(2015) Catherine M. Febria et al.   Frontiers in Microbiology

Estimating and mapping ecological processes influencing microbial community assembly

(2015) James C. Stegen et al.   Frontiers in Microbiology

Uptake of Dissolved Organic Carbon by Gammaproteobacterial Subgroups in Coastal Waters of the West Antarctic Peninsula

(2014) Mrinalini P. Nikrad et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Alteration of key hyporheic functions through biological and physical clogging along a nutrient and fine-sediment gradient

(2014) Melanie Hartwig et al.   Ecohydrology

Fluvial network organization imprints on microbial co-occurrence networks

(2014) S. Widder et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Hyporheic flow and transport processes: Mechanisms, models, and biogeochemical implications

(2014) F. Boano et al.   REVIEWS OF GEOPHYSICS

Short-term bioavailability of carbon in soil organic matter fractions of different particle sizes and densities in grassland ecosystems

(2014) Marc Breulmann et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Changes in community assembly may shift the relationship between biodiversity and ecosystem function

(2014) Joseph E. Knelman et al.   Frontiers in Microbiology

Dispersal limitation structures fungal community assembly in a long-term glacial chronosequence

(2013) Lauren C. Cline et al.   ENVIRONMENTAL MICROBIOLOGY

Dispersal in microbes: fungi in indoor air are dominated by outdoor air and show dispersal limitation at short distances

(2013) Rachel I Adams et al.   ISME Journal

Quantifying community assembly processes and identifying features that impose them

(2013) James C Stegen et al.   ISME Journal

Changes in assembly processes in soil bacterial communities following a wildfire disturbance

(2013) Scott Ferrenberg et al.   ISME Journal

Modular community structure suggests metabolic plasticity during the transition to polar night in ice-covered Antarctic lakes

(2013) Trista J Vick-Majors et al.   ISME Journal

Phylogenetic beta diversity in bacterial assemblages across ecosystems: deterministic versus stochastic processes

(2013) Jianjun Wang et al.   ISME Journal

Persistence of uranium groundwater plumes: Contrasting mechanisms at two DOE sites in the groundwater–river interaction zone

(2013) John M. Zachara et al.   JOURNAL OF CONTAMINANT HYDROLOGY

Ecology and management of the hyporheic zone: stream–groundwater interactions of running waters and their floodplains

(2013) Andrew J. Boulton et al.   JOURNAL OF THE NORTH AMERICAN BENTHOLOGICAL SOCIETY

Patterns and Processes of Microbial Community Assembly

(2013) D. R. Nemergut et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Do we need to understand microbial communities to predict ecosystem function? A comparison of statistical models of nitrogen cycling processes

(2013) Emily B. Graham et al.   SOIL BIOLOGY & BIOCHEMISTRY

The role of organisms in hyporheic processes: gaps in current knowledge, needs for future research and applications

(2012) P. Marmonier et al.   ANNALES DE LIMNOLOGIE-INTERNATIONAL JOURNAL OF LIMNOLOGY

Modelling the effects of dispersal mechanisms and hydrodynamic regimes upon the structure of microbial communities within fluvial biofilms

(2012) Stephen Woodcock et al.   ENVIRONMENTAL MICROBIOLOGY

Spatial and temporal dynamics of the microbial community in the Hanford unconfined aquifer

(2012) Xueju Lin et al.   ISME Journal

Stochastic and deterministic assembly processes in subsurface microbial communities

(2012) James C Stegen et al.   ISME Journal

Phylogenetic conservatism of functional traits in microorganisms

(2012) Adam C Martiny et al.   ISME Journal

Evolutionary rescue and adaptation to abrupt environmental change depends upon the history of stress

(2012) A. Gonzalez et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Correlating microbial community profiles with geochemical data in highly stratified sediments from the Arctic Mid-Ocean Ridge

(2012) S. L. Jorgensen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Functions of Biological Diversity in an Age of Extinction

(2012) S. Naeem et al.   SCIENCE

Genomic Analysis Indicates the Presence of an Asymmetric Bilayer Outer Membrane in Planctomycetes and Verrucomicrobia

(2012) Daan R. Speth et al.   Frontiers in Microbiology

Vertical stratification of subsurface microbial community composition across geological formations at the Hanford Site

(2011) Xueju Lin et al.   ENVIRONMENTAL MICROBIOLOGY

Bacterial community dynamics in the hyporheic zone of an intermittent stream

(2011) Catherine M Febria et al.   ISME Journal

Microbial diversity of biofilm communities in microniches associated with the didemnid ascidian Lissoclinum patella

(2011) Lars Behrendt et al.   ISME Journal

A Guide to the Natural History of Freshwater Lake Bacteria

(2011) R. J. Newton et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Beyond the bacterium: planctomycetes challenge our concepts of microbial structure and function

(2011) John A. Fuerst et al.   NATURE REVIEWS MICROBIOLOGY

Microbial seed banks: the ecological and evolutionary implications of dormancy

(2011) Jay T. Lennon et al.   NATURE REVIEWS MICROBIOLOGY

Local and regional factors influencing bacterial community assembly

(2011) Eva S. Lindström et al.   Environmental Microbiology Reports

Phylogenetic community structure and phylogenetic turnover across space and edaphic gradients in western Amazonian tree communities

(2010) Paul V. A. Fine et al.   ECOGRAPHY

Assembly history dictates ecosystem functioning: evidence from wood decomposer communities

(2010) Tadashi Fukami et al.   ECOLOGY LETTERS

Phylogenetic diversity and metagenomics of candidate division OP3

(2010) Jana Glöckner et al.   ENVIRONMENTAL MICROBIOLOGY

Ecology of the hyporheic zone: origins, current knowledge and future directions

(2010) A. L. Robertson et al.   Fundamental and Applied Limnology

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Physical Heterogeneity Increases Biofilm Resource Use and Its Molecular Diversity in Stream Mesocosms

(2010) Gabriel Singer et al.   PLoS One

Use of electrical imaging and distributed temperature sensing methods to characterize surface water-groundwater exchange regulating uranium transport at the Hanford 300 Area, Washington

(2010) Lee D. Slater et al.   WATER RESOURCES RESEARCH

Pyrosequencing-Based Assessment of Soil pH as a Predictor of Soil Bacterial Community Structure at the Continental Scale

(2009) C. L. Lauber et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Centrality measures and the importance of generalist species in pollination networks

(2009) Ana M. Martín González et al.   Ecological Complexity

Chitiniphilus shinanonensis gen. nov., sp. nov., a novel chitin-degrading bacterium belonging to Betaproteobacteria

(2009) Kazuaki Sato et al.   JOURNAL OF GENERAL AND APPLIED MICROBIOLOGY

Phylocom: software for the analysis of phylogenetic community structure and trait evolution

(2008) Campbell O. Webb et al.   BIOINFORMATICS