Identification of Syntrophobacteraceae as major acetate-degrading sulfate reducing bacteria in Italian paddy soil

Syntrophobacteraceae -affiliated species are major propionate-degrading sulfate reducers in paddy soil

(2017) Pengfei Liu et al.   ENVIRONMENTAL MICROBIOLOGY

RNA-stable isotope probing: from carbon flow within key microbiota to targeted transcriptomes

(2016) Tillmann Lueders et al.   CURRENT OPINION IN BIOTECHNOLOGY

Modeling the inhibition of dissolved H 2 on propionate fermentation and methanogenesis in wetland sediments

(2016) David S. Pal et al.   ECOLOGICAL MODELLING

Diversity analysis of sulfite- and sulfate-reducing microorganisms by multiplex dsrA and dsrB amplicon sequencing using new primers and mock community-optimized bioinformatics

(2016) Claus Pelikan et al.   ENVIRONMENTAL MICROBIOLOGY

Consortia of low-abundance bacteria drive sulfate reduction-dependent degradation of fermentation products in peat soil microcosms

(2016) Bela Hausmann et al.   ISME Journal

Climate-smart soils

(2016) Keith Paustian et al.   NATURE

Gypsum amendment to rice paddy soil stimulated bacteria involved in sulfur cycling but largely preserved the phylogenetic composition of the total bacterial community

(2016) Susanne Wörner et al.   Environmental Microbiology Reports

Distribution, Activities, and Interactions of Methanogens and Sulfate-Reducing Prokaryotes in the Florida Everglades

(2015) Hee-Sung Bae et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Nitrogen and methanogen community composition within and among three Sphagnum dominated peatlands in Scandinavia

(2015) Magalí Martí et al.   SOIL BIOLOGY & BIOCHEMISTRY

UnculturedDesulfobacteraceaeand Crenarchaeotal group C3 incorporate13C-acetate in coastal marine sediment

(2015) Hyunsoo Na et al.   Environmental Microbiology Reports

Active Microbial Communities Inhabit Sulphate-Methane Interphase in Deep Bedrock Fracture Fluids in Olkiluoto, Finland

(2015) Malin Bomberg et al.   Biomed Research International

A flexible and economical barcoding approach for highly multiplexed amplicon sequencing of diverse target genes

(2015) Craig W. Herbold et al.   Frontiers in Microbiology

Methane emission and dynamics of methanotrophic and methanogenic communities in a flooded rice field ecosystem

(2014) Hyo Jung Lee et al.   FEMS MICROBIOLOGY ECOLOGY

Desulfoprunum benzoelyticum gen. nov., sp. nov., a Gram-stain-negative, benzoate-degrading, sulfate-reducing bacterium isolated from a wastewater treatment plant

(2014) M. Junghare et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Phylogenetic and environmental diversity of DsrAB-type dissimilatory (bi)sulfite reductases

(2014) Albert Leopold Müller et al.   ISME Journal

Effects of Water-Saving Irrigation on Emissions of Greenhouse Gases and Prokaryotic Communities in Rice Paddy Soil

(2014) Jae-Hyung Ahn et al.   MICROBIAL ECOLOGY

Rice biomass production and carbon cycling in 13CO2 pulse-labeled microcosms with different soils under submerged conditions

(2014) Judith Pump et al.   PLANT AND SOIL

Dissecting the deep biosphere: retrieving authentic microbial communities from packer-isolated deep crystalline bedrock fracture zones

(2013) Lotta Purkamo et al.   FEMS MICROBIOLOGY ECOLOGY

Optimizing rice yields while minimizing yield-scaled global warming potential

(2013) Cameron M. Pittelkow et al.   GLOBAL CHANGE BIOLOGY

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Ecological Patterns of nifH Genes in Four Terrestrial Climatic Zones Explored with Targeted Metagenomics Using FrameBot, a New Informatics Tool

(2013) Q. Wang et al.   mBio

Syntrophic Oxidation of Propionate in Rice Field Soil at 15 and 30°C under Methanogenic Conditions

(2012) Yanlu Gan et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Sulfate-reducing bacteria inhabiting natural corrosion deposits from marine steel structures

(2012) Sandrine Païssé et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Fertilizer management practices and greenhouse gas emissions from rice systems: A quantitative review and analysis

(2012) Bruce A. Linquist et al.   FIELD CROPS RESEARCH

Complete genome sequence of Syntrophobacter fumaroxidans strain (MPOBT)

(2012) Caroline M. Plugge et al.   Standards in Genomic Sciences

Sulfate-reducing microorganisms in wetlands – fameless actors in carbon cycling and climate change

(2012) Michael Pester   Frontiers in Microbiology

Responses of MethanogenmcrAGenes and Their Transcripts to an Alternate Dry/Wet Cycle of Paddy Field Soil

(2011) Ke Ma et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

DNA-, rRNA- and mRNA-based stable isotope probing of aerobic methanotrophs in lake sediment

(2011) Marc G. Dumont et al.   ENVIRONMENTAL MICROBIOLOGY

Methanogenic archaea are globally ubiquitous in aerated soils and become active under wet anoxic conditions

(2011) Roey Angel et al.   ISME Journal

Performance, Accuracy, and Web Server for Evolutionary Placement of Short Sequence Reads under Maximum Likelihood

(2011) Simon A. Berger et al.   SYSTEMATIC BIOLOGY

Metabolic Flexibility of Sulfate-Reducing Bacteria

(2011) Caroline M. Plugge et al.   Frontiers in Microbiology

Microorganisms with Novel Dissimilatory (Bi)Sulfite Reductase Genes Are Widespread and Part of the Core Microbiota in Low-Sulfate Peatlands

(2010) Doris Steger et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Chemical inhibitors of methanogenesis and putative applications

(2010) He Liu et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Identifying biologically relevant differences between metagenomic communities

(2010) Donovan H. Parks et al.   BIOINFORMATICS

Succession of Bacterial Populations during Plant Residue Decomposition in Rice Field Soil

(2009) J. Rui et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Dynamics of sulfate reduction and sulfate-reducing prokaryotes in anaerobic paddy soil amended with rice straw

(2009) Ji-Zheng He et al.   BIOLOGY AND FERTILITY OF SOILS

Sulfate-reducing bacteria in marine sediment (Aarhus Bay, Denmark): abundance and diversity related to geochemical zonation

(2009) Julie Leloup et al.   ENVIRONMENTAL MICROBIOLOGY

A strictly anaerobic betaproteobacteriumGeorgfuchsia toluolicagen. nov., sp. nov. degrades aromatic compounds with Fe(III), Mn(IV) or nitrate as an electron acceptor

(2009) Sander A.B. Weelink et al.   FEMS MICROBIOLOGY ECOLOGY

Abundance and community structure of sulfate reducing prokaryotes in a paddy soil of southern China under different fertilization regimes

(2009) Xin-Zhan Liu et al.   SOIL BIOLOGY & BIOCHEMISTRY

The global methane cycle: recent advances in understanding the microbial processes involved

(2009) Ralf Conrad   Environmental Microbiology Reports

Intermediary ecosystem metabolism as a main driver of methanogenesis in acidic wetland soil

(2009) Harold L. Drake et al.   Environmental Microbiology Reports

Suppression of rice methane emission by sulfate deposition in simulated acid rain

(2008) Vincent Gauci et al.   JOURNAL OF GEOPHYSICAL RESEARCH