Ecological Patterns of nifH Genes in Four Terrestrial Climatic Zones Explored with Targeted Metagenomics Using FrameBot, a New Informatics Tool

Evidence for a persistent microbial seed bank throughout the global ocean

(2013) S. M. Gibbons et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Moss-cyanobacteria associations as biogenic sources of nitrogen in boreal forest ecosystems

(2013) Kathrin Rousk et al.   Frontiers in Microbiology

A gene-targeted approach to investigate the intestinal butyrate-producing bacterial community

(2013) Marius Vital et al.   Microbiome

A Comprehensive Evaluation of PCR Primers to Amplify the nifH Gene of Nitrogenase

(2012) John Christian Gaby et al.   PLoS One

HMM-FRAME: accurate protein domain classification for metagenomic sequences containing frameshift errors

(2011) Yuan Zhang et al.   BMC BIOINFORMATICS

Removing Noise From Pyrosequenced Amplicons

(2011) Christopher Quince et al.   BMC BIOINFORMATICS

The Pfam protein families database

(2011) M. Punta et al.   NUCLEIC ACIDS RESEARCH

Accelerated Profile HMM Searches

(2011) Sean R. Eddy   PLoS Computational Biology

Ironing out the wrinkles in the rare biosphere through improved OTU clustering

(2010) Susan M. Huse et al.   ENVIRONMENTAL MICROBIOLOGY

FragGeneScan: predicting genes in short and error-prone reads

(2010) Mina Rho et al.   NUCLEIC ACIDS RESEARCH

Gene-targeted-metagenomics reveals extensive diversity of aromatic dioxygenase genes in the environment

(2009) Shoko Iwai et al.   ISME Journal

The 'rare biosphere': a reality check

(2009) Jens Reeder et al.   NATURE METHODS

The Ribosomal Database Project: improved alignments and new tools for rRNA analysis

(2008) J. R. Cole et al.   NUCLEIC ACIDS RESEARCH

Modular networks and cumulative impact of lateral transfer in prokaryote genome evolution

(2008) T. Dagan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA