Antibiotic failure mediated by a resistant subpopulation in Enterobacter cloacae

Antimicrobial Heteroresistance: an Emerging Field in Need of Clarity

(2015) Omar M. El-Halfawy et al.   CLINICAL MICROBIOLOGY REVIEWS

Mixed Infections and Rifampin Heteroresistance among Mycobacterium tuberculosis Clinical Isolates

(2015) Chao Zheng et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Enterobacter aerogenes and Enterobacter cloacae; versatile bacterial pathogens confronting antibiotic treatment

(2015) Anne Davin-Regli et al.   Frontiers in Microbiology

Colistin Heteroresistance in Enterobacter cloacae Is Associated with Cross-Resistance to the Host Antimicrobial Lysozyme

(2014) Brooke A. Napier et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Serratia marcescensarn, a PhoP-Regulated Locus Necessary for Polymyxin B Resistance

(2014) Quei Yen Lin et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Phenotypic Variation of Salmonella in Host Tissues Delays Eradication by Antimicrobial Chemotherapy

(2014) Beatrice Claudi et al.   CELL

Heteroresistance of Helicobacter pylori from the same patient prior to antibiotic treatment

(2014) Cheng-Yen Kao et al.   INFECTION GENETICS AND EVOLUTION

Internalization of Salmonella by Macrophages Induces Formation of Nonreplicating Persisters

(2014) S. Helaine et al.   SCIENCE

Cecum Lymph Node Dendritic Cells Harbor Slow-Growing Bacteria Phenotypically Tolerant to Antibiotic Treatment

(2014) Patrick Kaiser et al.   PLOS BIOLOGY

ALE: a generic assembly likelihood evaluation framework for assessing the accuracy of genome and metagenome assemblies

(2013) Scott C. Clark et al.   BIOINFORMATICS

Irreproducible and Uninterpretable Polymyxin B MICs for Enterobacter cloacae and Enterobacter aerogenes

(2013) D. Landman et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Dynamic Persistence of Antibiotic-Stressed Mycobacteria

(2013) Y. Wakamoto et al.   SCIENCE

Enterobacter cloacaecomplex: clinical impact and emerging antibiotic resistance

(2012) Maria Lina Mezzatesta et al.   Future Microbiology

Hybrid error correction and de novo assembly of single-molecule sequencing reads

(2012) Sergey Koren et al.   NATURE BIOTECHNOLOGY

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

(2012) Cole Trapnell et al.   Nature Protocols

Identification of novel transcripts in annotated genomes using RNA-Seq

(2011) A. Roberts et al.   BIOINFORMATICS

Antibacterial agents: back to the future? Can we live with only colistin, co-trimoxazole and fosfomycin?

(2011) J. Carlet et al.   CLINICAL MICROBIOLOGY AND INFECTION

What remains against carbapenem-resistant Enterobacteriaceae? Evaluation of chloramphenicol, ciprofloxacin, colistin, fosfomycin, minocycline, nitrofurantoin, temocillin and tigecycline

(2011) David M. Livermore et al.   INTERNATIONAL JOURNAL OF ANTIMICROBIAL AGENTS

Characterization and Transcriptome Analysis of Mycobacterium tuberculosis Persisters

(2011) I. Keren et al.   mBio

Fast and accurate long-read alignment with Burrows–Wheeler transform

(2010) Heng Li et al.   BIOINFORMATICS

New Vector Tools with a Hygromycin Resistance Marker for Use with Opportunistic Pathogens

(2010) Eric J. Kalivoda et al.   MOLECULAR BIOTECHNOLOGY

Activation of PmrA inhibits LpxT-dependent phosphorylation of lipid A promoting resistance to antimicrobial peptides

(2010) Carmen M. Herrera et al.   MOLECULAR MICROBIOLOGY

Rational Design of a Plasmid Origin That Replicates Efficiently in Both Gram-Positive and Gram-Negative Bacteria

(2010) Anton V. Bryksin et al.   PLoS One

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Colistin in the 21st century

(2009) Roger L Nation et al.   CURRENT OPINION IN INFECTIOUS DISEASES

Activated by Different Signals, the PhoP/PhoQ Two-Component System Differentially Regulates Metal Uptake

(2009) E. Choi et al.   JOURNAL OF BACTERIOLOGY

Antimicrobial Susceptibility Testing: A Primer for Clinicians

(2009) Kristi M Kuper et al.   PHARMACOTHERAPY

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Analyzing real-time PCR data by the comparative CT method

(2008) Thomas D Schmittgen et al.   Nature Protocols

High-throughput functional annotation and data mining with the Blast2GO suite

(2008) S. Gotz et al.   NUCLEIC ACIDS RESEARCH