ALE: a generic assembly likelihood evaluation framework for assessing the accuracy of genome and metagenome assemblies
出版年份 2013 全文链接
标题
ALE: a generic assembly likelihood evaluation framework for assessing the accuracy of genome and metagenome assemblies
作者
关键词
-
出版物
BIOINFORMATICS
Volume 29, Issue 4, Pages 435-443
出版商
Oxford University Press (OUP)
发表日期
2013-01-10
DOI
10.1093/bioinformatics/bts723
参考文献
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- Feature-by-Feature – Evaluating De Novo Sequence Assembly
- (2012) Francesco Vezzi et al. PLoS One
- Untangling Genomes from Metagenomes: Revealing an Uncultured Class of Marine Euryarchaeota
- (2012) V. Iverson et al. SCIENCE
- Comparative studies of de novo assembly tools for next-generation sequencing technologies
- (2011) Yong Lin et al. BIOINFORMATICS
- Mauve Assembly Metrics
- (2011) Aaron E. Darling et al. BIOINFORMATICS
- Assemblathon 1: A competitive assessment of de novo short read assembly methods
- (2011) D. Earl et al. GENOME RESEARCH
- GAGE: A critical evaluation of genome assemblies and assembly algorithms
- (2011) S. L. Salzberg et al. GENOME RESEARCH
- Genovo: De Novo Assembly for Metagenomes
- (2011) Jonathan Laserson et al. JOURNAL OF COMPUTATIONAL BIOLOGY
- Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications
- (2011) Pelin Yilmaz et al. NATURE BIOTECHNOLOGY
- Comparing De Novo Genome Assembly: The Long and Short of It
- (2011) Giuseppe Narzisi et al. PLoS One
- Evaluation of Methods for De Novo Genome Assembly from High-Throughput Sequencing Reads Reveals Dependencies That Affect the Quality of the Results
- (2011) Niina Haiminen et al. PLoS One
- Metagenomic Discovery of Biomass-Degrading Genes and Genomes from Cow Rumen
- (2011) M. Hess et al. SCIENCE
- Next generation sequencing has lower sequence coverage and poorer SNP-detection capability in the regulatory regions
- (2011) Weixin Wang et al. Scientific Reports
- Analyzing and minimizing PCR amplification bias in Illumina sequencing libraries
- (2011) Daniel Aird et al. GENOME BIOLOGY
- Genome assembly quality: Assessment and improvement using the neutral indel model
- (2010) S. Meader et al. GENOME RESEARCH
- Genome sequence of the palaeopolyploid soybean
- (2010) Jeremy Schmutz et al. NATURE
- A human gut microbial gene catalogue established by metagenomic sequencing
- (2010) Junjie Qin et al. NATURE
- Whole-genome sequencing and comprehensive variant analysis of a Japanese individual using massively parallel sequencing
- (2010) Akihiro Fujimoto et al. NATURE GENETICS
- One Bacterial Cell, One Complete Genome
- (2010) Tanja Woyke et al. PLoS One
- The Integrated Genome Browser: free software for distribution and exploration of genome-scale datasets
- (2009) J. W. Nicol et al. BIOINFORMATICS
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Genome assembly reborn: recent computational challenges
- (2009) M. Pop BRIEFINGS IN BIOINFORMATICS
- De novo assembly of human genomes with massively parallel short read sequencing
- (2009) R. Li et al. GENOME RESEARCH
- A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea
- (2009) Dongying Wu et al. NATURE
- Sequencing technologies — the next generation
- (2009) Michael L. Metzker NATURE REVIEWS GENETICS
- Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
- (2009) Ben Langmead et al. GENOME BIOLOGY
- A machine-learning approach to combined evidence validation of genome assemblies
- (2008) Jeong-Hyeon Choi et al. BIOINFORMATICS
- The Complete Genome Sequence of Escherichia coli DH10B: Insights into the Biology of a Laboratory Workhorse
- (2008) T. Durfee et al. JOURNAL OF BACTERIOLOGY
- Real-Time DNA Sequencing from Single Polymerase Molecules
- (2008) J. Eid et al. SCIENCE
- Genome assembly forensics: finding the elusive mis-assembly
- (2008) Adam M Phillippy et al. GENOME BIOLOGY
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