A molecular phylogenetic framework for Bacillus subtilis using genome sequences and its application to Bacillus subtilis subspecies stecoris strain D7XPN1, an isolate from a commercial food-waste degrading bioreactor

Activation of Pathogenesis-related Genes by the Rhizobacterium, Bacillus sp. JS, Which Induces Systemic Resistance in Tobacco Plants

(2015) Ji-Seong Kim et al.   Plant Pathology Journal

EndophyticBacillus subtilisStrain E1R-J Is a Promising Biocontrol Agent for Wheat Powdery Mildew

(2015) Xiaoning Gao et al.   Biomed Research International

Genomic Heterogeneity and Ecological Speciation within One Subspecies of Bacillus subtilis

(2014) Sarah Kopac et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Prokka: rapid prokaryotic genome annotation

(2014) T. Seemann   BIOINFORMATICS

Integrating genomics into the taxonomy and systematics of the Bacteria and Archaea

(2014) J. Chun et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Benchmarking of Methods for Genomic Taxonomy

(2014) M. V. Larsen et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Genome sequence-based species delimitation with confidence intervals and improved distance functions

(2013) Jan P Meier-Kolthoff et al.   BMC BIOINFORMATICS

The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST)

(2013) Ross Overbeek et al.   NUCLEIC ACIDS RESEARCH

CMG-Biotools, a Free Workbench for Basic Comparative Microbial Genomics

(2013) Tammi Vesth et al.   PLoS One

Genomic insights into the taxonomic status of the three subspecies of Bacillus subtilis

(2013) Hana Yi et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Genomic characterization of the Bacillus cereus sensu lato species: Backdrop to the evolution of Bacillus anthracis

(2012) M. E. Zwick et al.   GENOME RESEARCH

Genome Sequence of the Plant Growth-Promoting Rhizobacterium Bacillus sp. Strain JS

(2012) J. Y. Song et al.   JOURNAL OF BACTERIOLOGY

Complete Sequence of the First Chimera Genome Constructed by Cloning the Whole Genome of Synechocystis Strain PCC6803 into the Bacillus subtilis 168 Genome

(2012) S. Watanabe et al.   JOURNAL OF BACTERIOLOGY

Minimum taxonomic criteria for bacterial genome sequence depositions and announcements

(2012) Matthew J. Bull et al.   JOURNAL OF MICROBIOLOGICAL METHODS

Quality control and preprocessing of metagenomic datasets

(2011) R. Schmieder et al.   BIOINFORMATICS

Bacillus taxonomy in the genomic era finds phenotypes to be essential though often misleading

(2011) Heather Maughan et al.   INFECTION GENETICS AND EVOLUTION

CD-HIT Suite: a web server for clustering and comparing biological sequences

(2010) Ying Huang et al.   BIOINFORMATICS

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

On the origin of prokaryotic species

(2009) W. F. Doolittle et al.   GENOME RESEARCH

Caloramator australicus sp. nov., a thermophilic, anaerobic bacterium from the Great Artesian Basin of Australia

(2009) C. D. Ogg et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Shifting the genomic gold standard for the prokaryotic species definition

(2009) Michael Richter et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The RAST Server: Rapid Annotations using Subsystems Technology

(2008) Ramy K Aziz et al.   BMC GENOMICS

Biological control against bacterial wilt and colonization of mulberry by an endophytic Bacillus subtilis strain

(2008) Xianling Ji et al.   FEMS MICROBIOLOGY ECOLOGY