Draft genome of the living fossil Ginkgo biloba

Double-Layer 3D Macro–Mesoporous Metal Oxide Modified Boron-Doped Diamond with Enhanced Photoelectrochemical Performance

(2016) Jiaqi Fan et al.   ACS Applied Materials & Interfaces

Whole genome duplication in coast redwood (Sequoia sempervirens ) and its implications for explaining the rarity of polyploidy in conifers

(2016) Alison Dawn Scott et al.   NEW PHYTOLOGIST

Antifeedant Activity of Ginkgo biloba Secondary Metabolites against Hyphantria cunea Larvae: Mechanisms and Applications

(2016) Long Pan et al.   PLoS One

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

(2015) Felipe A. Simão et al.   BIOINFORMATICS

The inhibitory mechanisms by mixtures of two endophytic bacterial strains isolated from Ginkgo biloba against pepper phytophthora blight

(2015) Ruixian Yang et al.   BIOLOGICAL CONTROL

The Ty1-copia LTR retroelement family PARTC is highly conserved in conifers over 200MY of evolution

(2015) Andrea Zuccolo et al.   GENE

An Exploration into Fern Genome Space

(2015) Paul G. Wolf et al.   Genome Biology and Evolution

Ancient Origin and Recent Innovations of RNA Polymerase IV and V

(2015) Yi Huang et al.   MOLECULAR BIOLOGY AND EVOLUTION

Deep Sequencing of the Fruit Transcriptome and Lipid Accumulation in a Non-Seed Tissue of Chinese Tallow, a Potential Biofuel Crop

(2015) Uday K. Divi et al.   PLANT AND CELL PHYSIOLOGY

Improved white spruce (Picea glauca) genome assemblies and annotation of large gene families of conifer terpenoid and phenolic defense metabolism

(2015) René L. Warren et al.   PLANT JOURNAL

Early genome duplications in conifers and other seed plants

(2015) Z. Li et al.   Science Advances

From algae to angiosperms–inferring the phylogeny of green plants (Viridiplantae) from 360 plastid genomes

(2014) Brad R Ruhfel et al.   BMC EVOLUTIONARY BIOLOGY

Evolution of gene structure in the conifer Picea glauca: a comparative analysis of the impact of intron size

(2014) Juliana Stival Sena et al.   BMC PLANT BIOLOGY

Unique Features of the Loblolly Pine (Pinus taeda L.) Megagenome Revealed Through Sequence Annotation

(2014) J. L. Wegrzyn et al.   GENETICS

Sequencing and Assembly of the 22-Gb Loblolly Pine Genome

(2014) A. Zimin et al.   GENETICS

The genome sequence of the orchid Phalaenopsis equestris

(2014) Jing Cai et al.   NATURE GENETICS

Gene Ontology Consortium: going forward

(2014)   NUCLEIC ACIDS RESEARCH

The InterPro protein families database: the classification resource after 15 years

(2014) Alex Mitchell et al.   NUCLEIC ACIDS RESEARCH

Insights into Conifer Giga-Genomes

(2014) A. R. De La Torre et al.   PLANT PHYSIOLOGY

Phylogeny and Divergence Times of Gymnosperms Inferred from Single-Copy Nuclear Genes

(2014) Ying Lu et al.   PLoS One

The Tvv1 retrotransposon family is conserved between plant genomes separated by over 100 million years

(2014) Cédric Moisy et al.   THEORETICAL AND APPLIED GENETICS

Decoding the massive genome of loblolly pine using haploid DNA and novel assembly strategies

(2014) David B Neale et al.   GENOME BIOLOGY

Assembling the 20 Gb white spruce (Picea glauca) genome from whole-genome shotgun sequencing data

(2013) Inanc Birol et al.   BIOINFORMATICS

Chloroplast Phylogenomics Indicates that Ginkgo biloba Is Sister to Cycads

(2013) Chung-Shien Wu et al.   Genome Biology and Evolution

The Norway spruce genome sequence and conifer genome evolution

(2013) Björn Nystedt et al.   NATURE

Insights into the Loblolly Pine Genome: Characterization of BAC and Fosmid Sequences

(2013) Jill L. Wegrzyn et al.   PLoS One

Phylogenomics and Coalescent Analyses Resolve Extant Seed Plant Relationships

(2013) Zhenxiang Xi et al.   PLoS One

Slow but not low: genomic comparisons reveal slower evolutionary rate and higher dN/dS in conifers compared to angiosperms

(2012) Emmanuel Buschiazzo et al.   BMC EVOLUTIONARY BIOLOGY

Conifer genome sizes of 172 species, covering 64 of 67 genera, range from 8 to 72 picogram

(2012) B. J. M. Zonneveld   NORDIC JOURNAL OF BOTANY

Ginkgo biloba Responds to Herbivory by Activating Early Signaling and Direct Defenses

(2012) Tapan Kumar Mohanta et al.   PLoS One

SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler

(2012) Ruibang Luo et al.   GigaScience

Ancestral polyploidy in seed plants and angiosperms

(2011) Yuannian Jiao et al.   NATURE

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Functional genomics of a living fossil tree, Ginkgo, based on next-generation sequencing technology

(2011) Xiaohan Lin et al.   PHYSIOLOGIA PLANTARUM

Differentiation of the maize subgenomes by genome dominance and both ancient and ongoing gene loss

(2011) J. C. Schnable et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Functional Phylogenomic View of the Seed Plants

(2011) Ernest K. Lee et al.   PLoS Genetics

The Pinus taeda genome is characterized by diverse and highly diverged repetitive sequences

(2010) Allen Kovach et al.   BMC GENOMICS

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

Evolutionary conserved lineage of Angela-family retrotransposons as a genome-wide microsatellite repeat dispersal agent

(2009) P Smýkal et al.   HEREDITY

The Sorghum bicolor genome and the diversification of grasses

(2009) Andrew H. Paterson et al.   NATURE

The B73 Maize Genome: Complexity, Diversity, and Dynamics

(2009) P. S. Schnable et al.   SCIENCE

Analysis of expressed sequence tags from Ginkgo mature foliage in China

(2009) Yi-Qiang Wang et al.   Tree Genetics & Genomes

Exceptional Diversity, Non-Random Distribution, and Rapid Evolution of Retroelements in the B73 Maize Genome

(2009) Regina S. Baucom et al.   PLoS Genetics

An overview of fossil Ginkgoales

(2009) Zhi-Yan Zhou   Palaeoworld

Phylogeography of a living fossil: Pleistocene glaciations forced Ginkgo biloba L. (Ginkgoaceae) into two refuge areas in China with limited subsequent postglacial expansion

(2008) Wei Gong et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Herbivory induces a ROS burst and the release of volatile organic compounds in the fernPteris vittataL.

(2008) Gloria Imbiscuso et al.   Journal of Plant Interactions