标题
Phylogenomics and Coalescent Analyses Resolve Extant Seed Plant Relationships
作者
关键词
-
出版物
PLoS One
Volume 8, Issue 11, Pages e80870
出版商
Public Library of Science (PLoS)
发表日期
2013-11-22
DOI
10.1371/journal.pone.0080870
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Land plant evolutionary timeline: Gene effects are secondary to fossil constraints in relaxed clock estimation of age and substitution rates
- (2013) Susana Magallón et al. AMERICAN JOURNAL OF BOTANY
- Chloroplast Phylogenomics Indicates that Ginkgo biloba Is Sister to Cycads
- (2013) Chung-Shien Wu et al. Genome Biology and Evolution
- Resolving conflict in eutherian mammal phylogeny using phylogenomics and the multispecies coalescent model
- (2012) S. Song et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- A genome triplication associated with early diversification of the core eudicots
- (2012) Yuannian Jiao et al. GENOME BIOLOGY
- Difficult phylogenetic questions: more data, maybe; better methods, certainly
- (2011) Hervé Philippe et al. BMC BIOLOGY
- Diversification of land plants: insights from a family-level phylogenetic analysis
- (2011) Omar Fiz-Palacios et al. BMC EVOLUTIONARY BIOLOGY
- Origin of land plants: Do conjugating green algae hold the key?
- (2011) Sabina Wodniok et al. BMC EVOLUTIONARY BIOLOGY
- Loss of Different Inverted Repeat Copies from the Chloroplast Genomes of Pinaceae and Cupressophytes and Influence of Heterotachy on the Evaluation of Gymnosperm Phylogeny
- (2011) Chung-Shien Wu et al. Genome Biology and Evolution
- Systematic Error in Seed Plant Phylogenomics
- (2011) Bojian Zhong et al. Genome Biology and Evolution
- Ancestral polyploidy in seed plants and angiosperms
- (2011) Yuannian Jiao et al. NATURE
- Establishing a time-scale for plant evolution
- (2011) John T. Clarke et al. NEW PHYTOLOGIST
- Cenozoic extinctions account for the low diversity of extant gymnosperms compared with angiosperms
- (2011) Michael D. Crisp et al. NEW PHYTOLOGIST
- The Selaginella Genome Identifies Genetic Changes Associated with the Evolution of Vascular Plants
- (2011) J. A. Banks et al. SCIENCE
- An embryological study and systematic significance of the primitive gymnosperm Ginkgo biloba
- (2011) Li WANG et al. Journal of Systematics and Evolution
- A Functional Phylogenomic View of the Seed Plants
- (2011) Ernest K. Lee et al. PLoS Genetics
- Phybase: an R package for species tree analysis
- (2010) L. Liu et al. BIOINFORMATICS
- A maximum pseudo-likelihood approach for estimating species trees under the coalescent model
- (2010) Liang Liu et al. BMC EVOLUTIONARY BIOLOGY
- Multigene Phylogeny of the Green Lineage Reveals the Origin and Diversification of Land Plants
- (2010) Cédric Finet et al. CURRENT BIOLOGY
- Using Phylogenomic Patterns and Gene Ontology to Identify Proteins of Importance in Plant Evolution
- (2010) Angélica Cibrián-Jaramillo et al. Genome Biology and Evolution
- Automated Removal of Noisy Data in Phylogenomic Analyses
- (2010) Vadim V. Goremykin et al. JOURNAL OF MOLECULAR EVOLUTION
- The Position of Gnetales among Seed Plants: Overcoming Pitfalls of Chloroplast Phylogenomics
- (2010) B. Zhong et al. MOLECULAR BIOLOGY AND EVOLUTION
- Defining the limits of flowers: the challenge of distinguishing between the evolutionary products of simple versus compound strobili
- (2010) P. J. Rudall et al. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- A duplicate gene rooting of seed plants and the phylogenetic position of flowering plants
- (2010) S. Mathews et al. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Lineage-specific group II intron gains and losses of the mitochondrial rps3 gene in gymnosperms
- (2010) Teresa M.R. Regina et al. PLANT PHYSIOLOGY AND BIOCHEMISTRY
- An uncorrelated relaxed-clock analysis suggests an earlier origin for flowering plants
- (2010) S. A. Smith et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses
- (2009) S. Capella-Gutierrez et al. BIOINFORMATICS
- Fast evolution of the retroprocessed mitochondrial rps3 gene in Conifer II and further evidence for the phylogeny of gymnosperms
- (2009) Jin-Hua Ran et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- The Impact of Outgroup Choice and Missing Data on Major Seed Plant Phylogenetics Using Genome-Wide EST Data
- (2009) Jose Eduardo de la Torre-Bárcena et al. PLoS One
- Assessing the root of bilaterian animals with scalable phylogenomic methods
- (2009) A. Hejnol et al. PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Phylogenetic Analysis in the Anomaly Zone
- (2009) Liang Liu et al. SYSTEMATIC BIOLOGY
- Estimating Species Phylogenies Using Coalescence Times among Sequences
- (2009) Liang Liu et al. SYSTEMATIC BIOLOGY
- Gene tree discordance, phylogenetic inference and the multispecies coalescent
- (2009) James H. Degnan et al. TRENDS IN ECOLOGY & EVOLUTION
- Different gymnosperm outgroups have (mostly) congruent signal regarding the root of flowering plant phylogeny
- (2008) Sean W. Graham et al. AMERICAN JOURNAL OF BOTANY
- Phylogenetic relationships among seed plants: Persistent questions and the limits of molecular data
- (2008) Sarah Mathews AMERICAN JOURNAL OF BOTANY
- Phyutility: a phyloinformatics tool for trees, alignments and molecular data
- (2008) S. A. Smith et al. BIOINFORMATICS
- Inference of higher-order conifer relationships from a multi-locus plastid data setThis paper is one of a selection of papers published in the Special Issue on Systematics Research.
- (2008) Hardeep S. Rai et al. Botany
- ESTIMATING SPECIES TREES USING MULTIPLE-ALLELE DNA SEQUENCE DATA
- (2008) Liang Liu et al. EVOLUTION
- Calculating Bootstrap Probabilities of Phylogeny Using Multilocus Sequence Data
- (2008) T.-K. Seo MOLECULAR BIOLOGY AND EVOLUTION
- Broad phylogenomic sampling improves resolution of the animal tree of life
- (2008) Casey W. Dunn et al. NATURE
- Discordance of Species Trees with Their Most Likely Gene Trees: The Case of Five Taxa
- (2008) Noah A. Rosenberg et al. SYSTEMATIC BIOLOGY
- Testing regions with nonsmooth boundaries via multiscale bootstrap
- (2007) Hidetoshi Shimodaira JOURNAL OF STATISTICAL PLANNING AND INFERENCE
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreFind the ideal target journal for your manuscript
Explore over 38,000 international journals covering a vast array of academic fields.
Search