Marine microbial communities of the Great Barrier Reef lagoon are influenced by riverine floodwaters and seasonal weather events

Error filtering, pair assembly and error correction for next-generation sequencing reads

(2015) Robert C. Edgar et al.   BIOINFORMATICS

Genomes of Planktonic Acidimicrobiales : Widening Horizons for Marine Actinobacteria by Metagenomics

(2015) Carolina Megumi Mizuno et al.   mBio

Temporal and Vertical Distributions of Bacterioplankton at the Gray's Reef National Marine Sanctuary

(2014) Xinxin Lu et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The Bio-Community Perl toolkit for microbial ecology

(2014) Florent E. Angly et al.   BIOINFORMATICS

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Impacts of Cyclone Yasi on nearshore, terrigenous sediment-dominated reefs of the central Great Barrier Reef, Australia

(2014) C.T. Perry et al.   GEOMORPHOLOGY

The effects of river run-off on water clarity across the central Great Barrier Reef

(2014) K.E. Fabricius et al.   MARINE POLLUTION BULLETIN

CopyRighter: a rapid tool for improving the accuracy of microbial community profiles through lineage-specific gene copy number correction

(2014) Florent E Angly et al.   Microbiome

Wastewater Treatment Effluent Reduces the Abundance and Diversity of Benthic Bacterial Communities in Urban and Suburban Rivers

(2013) Bradley Drury et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

PEAR: a fast and accurate Illumina Paired-End reAd mergeR

(2013) J. Zhang et al.   BIOINFORMATICS

Occurrence of Diuron and Irgarol in seawater, sediments and planktons of Seto Inland Sea, Japan

(2013) SARANGARAJA BALAKRISHNAN et al.   GEOCHEMICAL JOURNAL

Determining indicator taxa across spatial and seasonal gradients in the Columbia River coastal margin

(2013) Caroline S Fortunato et al.   ISME Journal

Genomics in marine monitoring: New opportunities for assessing marine health status

(2013) Sarah J. Bourlat et al.   MARINE POLLUTION BULLETIN

Diet rapidly and reproducibly alters the human gut microbiome

(2013) Lawrence A. David et al.   NATURE

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

Future reef decalcification under a business-as-usual CO2 emission scenario

(2013) S. G. Dove et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Metagenomics uncovers a new group of low GC and ultra-small marine Actinobacteria

(2013) Rohit Ghai et al.   Scientific Reports

Exposure of inshore corals to suspended sediments due to wave-resuspension and river plumes in the central Great Barrier Reef: A reappraisal

(2012) Alan R. Orpin et al.   CONTINENTAL SHELF RESEARCH

The influence of a season of extreme wet weather events on exposure of the World Heritage Area Great Barrier Reef to pesticides

(2012) Karen Kennedy et al.   MARINE POLLUTION BULLETIN

Mapping the pollutants in surface riverine flood plume waters in the Great Barrier Reef, Australia

(2012) M.J. Devlin et al.   MARINE POLLUTION BULLETIN

Inter-annual variability of wet season freshwater plume extent into the Great Barrier Reef lagoon based on satellite coastal ocean colour observations

(2012) Thomas Schroeder et al.   MARINE POLLUTION BULLETIN

Terrestrial pollutant runoff to the Great Barrier Reef: An update of issues, priorities and management responses

(2012) J.E. Brodie et al.   MARINE POLLUTION BULLETIN

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Abrolhos Bank Reef Health Evaluated by Means of Water Quality, Microbial Diversity, Benthic Cover, and Fish Biomass Data

(2012) Thiago Bruce et al.   PLoS One

The 27-year decline of coral cover on the Great Barrier Reef and its causes

(2012) G. De'ath et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Untangling Genomes from Metagenomes: Revealing an Uncultured Class of Marine Euryarchaeota

(2012) V. Iverson et al.   SCIENCE

Rapid adaptation of the bacterial community in the growing rabbit caecum after a change in dietary fibre supply

(2011) R. J. Michelland et al.   Animal

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Evidence that water quality is an important driver of reef biota is not refuted: response to Ridd et al.

(2011) Glenn De'ath et al.   ECOLOGICAL APPLICATIONS

Phylogenetic diversity, composition and distribution of bacterioplankton community in the Dongjiang River, China

(2011) Zhenghui Liu et al.   FEMS MICROBIOLOGY ECOLOGY

Black reefs: iron-induced phase shifts on coral reefs

(2011) Linda Wegley Kelly et al.   ISME Journal

Spatial variability overwhelms seasonal patterns in bacterioplankton communities across a river to ocean gradient

(2011) Caroline S Fortunato et al.   ISME Journal

Defining seasonal marine microbial community dynamics

(2011) Jack A Gilbert et al.   ISME Journal

An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea

(2011) Daniel McDonald et al.   ISME Journal

Water quality in the inshore Great Barrier Reef lagoon: Implications for long-term monitoring and management

(2011) Britta Schaffelke et al.   MARINE POLLUTION BULLETIN

Metagenomics of the Water Column in the Pristine Upper Course of the Amazon River

(2011) Rohit Ghai et al.   PLoS One

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Associations between species and groups of sites: indices and statistical inference

(2009) Miquel De Cáceres et al.   ECOLOGY

Dynamics of the SAR11 bacterioplankton lineage in relation to environmental conditions in the oligotrophic North Pacific subtropical gyre

(2009) Alexander Eiler et al.   ENVIRONMENTAL MICROBIOLOGY

Metagenomic analysis of stressed coral holobionts

(2009) Rebecca Vega Thurber et al.   ENVIRONMENTAL MICROBIOLOGY

The seasonal structure of microbial communities in the Western English Channel

(2009) Jack A. Gilbert et al.   ENVIRONMENTAL MICROBIOLOGY

Herbicides: A new threat to the Great Barrier Reef

(2009) Stephen E. Lewis et al.   ENVIRONMENTAL POLLUTION

Seasonality and vertical structure of microbial communities in an ocean gyre

(2009) Alexander H Treusch et al.   ISME Journal

Spatial extent of riverine flood plumes and exposure of marine ecosystems in the Tully coastal region, Great Barrier Reef

(2009) Michelle Devlin et al.   MARINE AND FRESHWATER RESEARCH

Monitoring pesticides in the Great Barrier Reef

(2009) Melanie Shaw et al.   MARINE POLLUTION BULLETIN

Responses of Planktonic Microorganisms from Tropical Reservoirs to Paraquat and Deltamethrin Exposure

(2008) Christophe Leboulanger et al.   ARCHIVES OF ENVIRONMENTAL CONTAMINATION AND TOXICOLOGY

Seasonal dynamics of SAR11 populations in the euphotic and mesopelagic zones of the northwestern Sargasso Sea

(2008) Craig A Carlson et al.   ISME Journal

The environmental fate of diuron under a conventional production regime in a sugarcane farm during the plant cane phase

(2008) Peter R Stork et al.   PEST MANAGEMENT SCIENCE

Microbial Ecology of Four Coral Atolls in the Northern Line Islands

(2008) Elizabeth A. Dinsdale et al.   PLoS One