BluePyOpt: Leveraging Open Source Software and Cloud Infrastructure to Optimise Model Parameters in Neuroscience

Reconstruction and Simulation of Neocortical Microcircuitry

(2015) Henry Markram et al.   CELL

The neocortical microcircuit collaboration portal: a resource for rat somatosensory cortex

(2015) Srikanth Ramaswamy et al.   Frontiers in Neural Circuits

Automated High-Throughput Characterization of Single Neurons by Means of Simplified Spiking Models

(2015) Christian Pozzorini et al.   PLoS Computational Biology

Python in neuroscience

(2015) Eilif Muller et al.   Frontiers in Neuroinformatics

A million spiking-neuron integrated circuit with a scalable communication network and interface

(2014) P. A. Merolla et al.   SCIENCE

A flexible, interactive software tool for fitting the parameters of neuronal models

(2014) Péter Friedrich et al.   Frontiers in Neuroinformatics

CyNEST: a maintainable Cython-based interface for the NEST simulator

(2014) Yury V. Zaytsev et al.   Frontiers in Neuroinformatics

LEMS: a language for expressing complex biological models in concise and hierarchical form and its use in underpinning NeuroML 2

(2014) Robert C. Cannon et al.   Frontiers in Neuroinformatics

An efficient automated parameter tuning framework for spiking neural networks

(2014) Kristofor D. Carlson et al.   Frontiers in Neuroscience

Automated optimization of a reduced layer 5 pyramidal cell model based on experimental data

(2012) Armin Bahl et al.   JOURNAL OF NEUROSCIENCE METHODS

Using Evolutionary Algorithms for Fitting High-Dimensional Models to Neuronal Data

(2012) Carl-Magnus Svensson et al.   NEUROINFORMATICS

Calcium-based plasticity model explains sensitivity of synaptic changes to spike pattern, rate, and dendritic location

(2012) M. Graupner et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

NineML: the network interchange for neuroscience modeling language

(2011) Ivan Raikov et al.   BMC NEUROSCIENCE

Effective Stimuli for Constructing Reliable Neuron Models

(2011) Shaul Druckmann et al.   PLoS Computational Biology

Models of Neocortical Layer 5b Pyramidal Cells Capturing a Wide Range of Dendritic and Perisomatic Active Properties

(2011) Etay Hay et al.   PLoS Computational Biology

The Brian simulator

(2010) Dan F M. Goodman   Frontiers in Neuroscience

How Multiple Conductances Determine Electrophysiological Properties in a Multicompartment Model

(2009) A. L. Taylor et al.   JOURNAL OF NEUROSCIENCE

Smoothing of, and Parameter Estimation from, Noisy Biophysical Recordings

(2009) Quentin J. M. Huys et al.   PLoS Computational Biology

PyNEST: A convenient interface to the NEST simulator

(2009) Jochen M Eppler   Frontiers in Neuroinformatics

PyNN: a common interface for neuronal network simulators

(2009) Andrew P Davison   Frontiers in Neuroinformatics

STEPS: Modeling and simulating complex reaction-diffusion systems with Python

(2009) Stefan Wils   Frontiers in Neuroinformatics

NEURON and Python

(2009) Michael Hines   Frontiers in Neuroinformatics

The quantitative single-neuron modeling competition

(2008) Renaud Jolivet et al.   BIOLOGICAL CYBERNETICS

Automated neuron model optimization techniques: a review

(2008) W. Van Geit et al.   BIOLOGICAL CYBERNETICS

Large-scale model of mammalian thalamocortical systems

(2008) E. M. Izhikevich et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

PyMOOSE: Interoperable scripting in Python for MOOSE

(2008) Upinder S. Bhalla   Frontiers in Neuroinformatics