LEMS: a language for expressing complex biological models in concise and hierarchical form and its use in underpinning NeuroML 2

Simulating spiking neural networks on GPU

(2018) Romain Brette et al.   NETWORK-COMPUTATION IN NEURAL SYSTEMS

Network Structure within the Cerebellar Input Layer Enables Lossless Sparse Encoding

(2014) Guy Billings et al.   NEURON

Glutamate-Bound NMDARs Arising from In Vivo-like Network Activity Extend Spatio-temporal Integration in a L5 Cortical Pyramidal Cell Model

(2014) Matteo Farinella et al.   PLoS Computational Biology

Quantitative assessment of CA1 local circuits: Knowledge base for interneuron-pyramidal cell connectivity

(2013) Marianne J. Bezaire et al.   HIPPOCAMPUS

Connectomic reconstruction of the inner plexiform layer in the mouse retina

(2013) Moritz Helmstaedter et al.   NATURE

Software for systems biology: from tools to integrated platforms

(2011) Samik Ghosh et al.   NATURE REVIEWS GENETICS

Code Generation: A Strategy for Neural Network Simulators

(2010) Dan F. M. Goodman   NEUROINFORMATICS

NeuroML: A Language for Describing Data Driven Models of Neurons and Networks with a High Degree of Biological Detail

(2010) Padraig Gleeson et al.   PLoS Computational Biology

Hybrid dynamical systems

(2009)   IEEE CONTROL SYSTEMS MAGAZINE

PyNN: a common interface for neuronal network simulators

(2009) Andrew P Davison   Frontiers in Neuroinformatics

Reconstruction of biochemical networks in microorganisms

(2008) Adam M. Feist et al.   NATURE REVIEWS MICROBIOLOGY

Why Are Computational Neuroscience and Systems Biology So Separate?

(2008) Erik De Schutter   PLoS Computational Biology

Brian: a simulator for spiking neural networks in Python

(2008) Dan Goodman   Frontiers in Neuroinformatics