Combining Image Analysis, Genome Wide Association Studies and Different Field Trials to Reveal Stable Genetic Regions Related to Panicle Architecture and the Number of Spikelets per Panicle in Rice

Bioinformatic analysis of genotype by sequencing (GBS) data with NGSEP

(2016) Claudia Perea et al.   BMC GENOMICS

Genome-wide association and high-resolution phenotyping link Oryza sativa panicle traits to numerous trait-specific QTL clusters

(2016) Samuel Crowell et al.   Nature Communications

Differential response of rice plants to high night temperatures imposed at varying developmental phases

(2015) Ma. Rebecca C. Laza et al.   AGRICULTURAL AND FOREST METEOROLOGY

Understanding rice adaptation to varying agro-ecosystems: trait interactions and quantitative trait loci

(2015) Shalabh Dixit et al.   BMC GENETICS

Improving yield potential of tropical rice: Achieved levels and perspectives through improved ideotypes

(2015) Michael Dingkuhn et al.   FIELD CROPS RESEARCH

Phenotypic and genetic dissection of component traits for early vigour in rice using plant growth modelling, sugar content analyses and association mapping

(2015) M. C. Rebolledo et al.   JOURNAL OF EXPERIMENTAL BOTANY

Environmental Response and Genomic Regions Correlated with Rice Root Growth and Yield under Drought in the OryzaSNP Panel across Multiple Study Systems

(2015) Len J. Wade et al.   PLoS One

QTLs underlying inflorescence architecture in sorghum (Sorghum bicolor (L.) Moench) as detected by association analysis

(2014) Khaing Pann Witt Hmon et al.   GENETIC RESOURCES AND CROP EVOLUTION

Genetic dissection of ozone tolerance in rice (Oryza sativa L.) by a genome-wide association study

(2014) Yoshiaki Ueda et al.   JOURNAL OF EXPERIMENTAL BOTANY

An integrated framework for discovery and genotyping of genomic variants from high-throughput sequencing experiments

(2014) Jorge Duitama et al.   NUCLEIC ACIDS RESEARCH

Fine mapping and candidate gene analysis of a major QTL for panicle structure in rice

(2014) Youlin Peng et al.   PLANT CELL REPORTS

High-Resolution Inflorescence Phenotyping Using a Novel Image-Analysis Pipeline, PANorama

(2014) S. Crowell et al.   PLANT PHYSIOLOGY

Genome Wide Association Mapping of Grain Arsenic, Copper, Molybdenum and Zinc in Rice (Oryza sativa L.) Grown at Four International Field Sites

(2014) Gareth J. Norton et al.   PLoS One

Functional Characterization of the Rice UDP-glucose 4-epimerase 1, OsUGE1: A Potential Role in Cell Wall Carbohydrate Partitioning during Limiting Nitrogen Conditions

(2014) David R. Guevara et al.   PLoS One

The 3,000 rice genomes project

(2014)   GigaScience

P-TRAP: a Panicle Trait Phenotyping tool

(2013) Faroq AL-Tam et al.   BMC PLANT BIOLOGY

A near isogenic line of rice carrying chromosome segments containing OsSPS1 of Kasalath in the genetic background of Koshihikari produces an increased spikelet number per panicle

(2013) Yoichi Hashida et al.   FIELD CROPS RESEARCH

Tillering and panicle branching genes in rice

(2013) Wei-hong Liang et al.   GENE

Yield Trends Are Insufficient to Double Global Crop Production by 2050

(2013) Deepak K. Ray et al.   PLoS One

NAL1 allele from a rice landrace greatly increases yield in modern indica cultivars

(2013) D. Fujita et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Iron-binding haemerythrin RING ubiquitin ligases regulate plant iron responses and accumulation

(2013) Takanori Kobayashi et al.   Nature Communications

The U-Box E3 Ubiquitin Ligase TUD1 Functions with a Heterotrimeric G α Subunit to Regulate Brassinosteroid-Mediated Growth in Rice

(2013) Xingming Hu et al.   PLoS Genetics

Molecular characterization, expression and functional analysis of the amino acid transporter gene family (OsAATs) in rice

(2012) Yongen Lu et al.   ACTA PHYSIOLOGIAE PLANTARUM

Altered expression of thePTR/NRT1homologueOsPTR9affects nitrogen utilization efficiency, growth and grain yield in rice

(2012) Zhongming Fang et al.   PLANT BIOTECHNOLOGY JOURNAL

DWARF AND LOW-TILLERING Acts as a Direct Downstream Target of a GSK3/SHAGGY-Like Kinase to Mediate Brassinosteroid Responses in Rice

(2012) Hongning Tong et al.   PLANT CELL

Characterization of Osmads6-5, a null allele, reveals that OsMADS6 is a critical regulator for early flower development in rice (Oryza sativa L.)

(2012) Yuanlin Duan et al.   PLANT MOLECULAR BIOLOGY

Unraveling the Complex Trait of Harvest Index with Association Mapping in Rice (Oryza sativa L.)

(2012) Xiaobai Li et al.   PLoS One

Population genomic and genome-wide association studies of agroclimatic traits in sorghum

(2012) G. P. Morris et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Rice APC/CTE controls tillering by mediating the degradation of MONOCULM 1

(2012) Qibing Lin et al.   Nature Communications

Functional Diversity of Isoamylase Oligomers: The ISA1 Homo-Oligomer Is Essential for Amylopectin Biosynthesis in Rice Endosperm

(2011) Y. Utsumi et al.   PLANT PHYSIOLOGY

Rice Ethylene-Response AP2/ERF Factor OsEATB Restricts Internode Elongation by Down-Regulating a Gibberellin Biosynthetic Gene

(2011) Weiwei Qi et al.   PLANT PHYSIOLOGY

Yield Component Differences between Direct-Seeded and Transplanted Super Hybrid Rice

(2011) Min Huang et al.   PLANT PRODUCTION SCIENCE

A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species

(2011) Robert J. Elshire et al.   PLoS One

Oryza sativa Cytochrome P450 Family Member OsCYP96B4 Reduces Plant Height in a Transcript Dosage Dependent Manner

(2011) Rengasamy Ramamoorthy et al.   PLoS One

Fine mapping and candidate gene analysis of dense and erect panicle 3, DEP3, which confers high grain yield in rice (Oryza sativa L.)

(2011) Yongli Qiao et al.   THEORETICAL AND APPLIED GENETICS

A genetic playground for enhancing grain number in cereals

(2011) Nese Sreenivasulu et al.   TRENDS IN PLANT SCIENCE

Branching in rice

(2010) Yonghong Wang et al.   CURRENT OPINION IN PLANT BIOLOGY

Raising yield potential of wheat. III. Optimizing partitioning to grain while maintaining lodging resistance

(2010) M. J. Foulkes et al.   JOURNAL OF EXPERIMENTAL BOTANY

OsSPL14 promotes panicle branching and higher grain productivity in rice

(2010) Kotaro Miura et al.   NATURE GENETICS

Molecular cloning and functional characterization of OsJAG gene based on a complete-deletion mutant in rice (Oryza sativa L.)

(2010) Yuanlin Duan et al.   PLANT MOLECULAR BIOLOGY

Mitochondrial gene in the nuclear genome induces reproductive barrier in rice

(2010) Y. Yamagata et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Rice direct seeding: Experiences, challenges and opportunities

(2010) M. Farooq et al.   SOIL & TILLAGE RESEARCH

NECK LEAF 1, a GATA type transcription factor, modulates organogenesis by regulating the expression of multiple regulatory genes during reproductive development in rice

(2009) Liping Wang et al.   CELL RESEARCH

Short panicle1encodes a putative PTR family transporter and determines rice panicle size

(2009) Shengben Li et al.   PLANT JOURNAL

Functional conservation and diversification of class E floral homeotic genes in rice (Oryza sativa)

(2009) Rongfeng Cui et al.   PLANT JOURNAL

Control of rice grain-filling and yield by a gene with a potential signature of domestication

(2008) Ertao Wang et al.   NATURE GENETICS

Rice jmjC domain-containing gene JMJ706 encodes H3K9 demethylase required for floral organ development

(2008) Q. Sun et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genetic dissection and pyramiding of quantitative traits for panicle architecture by using chromosomal segment substitution lines in rice

(2008) Tsuyu Ando et al.   THEORETICAL AND APPLIED GENETICS