RNA-seq Transcriptome Analysis of Panax japonicus, and Its Comparison with Other Panax Species to Identify Potential Genes Involved in the Saponins Biosynthesis

Omics data input for metabolic modeling

(2016) Amit Rai et al.   CURRENT OPINION IN BIOTECHNOLOGY

Resource investigation of traditional medicinal plant Panax japonicus (T.Nees) C.A. Mey and its varieties in China

(2015) Shaopeng Zhang et al.   JOURNAL OF ETHNOPHARMACOLOGY

High-Throughput Sequencing and De Novo Assembly of Red and Green Forms of the Perilla frutescens var. crispa Transcriptome

(2015) Atsushi Fukushima et al.   PLoS One

Ginsenosides: prospective for sustainable biotechnological production

(2014) Hosakatte Niranjana Murthy et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Saponins in the genus Panax L. (Araliaceae): A systematic review of their chemical diversity

(2014) Wen-zhi Yang et al.   PHYTOCHEMISTRY

Polysaccharides from Panax japonicus C.A. Meyer and their antioxidant activities

(2013) Xiaolin Yang et al.   CARBOHYDRATE POLYMERS

Phytochemical genomics — a new trend

(2013) Kazuki Saito   CURRENT OPINION IN PLANT BIOLOGY

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Data, information, knowledge and principle: back to metabolism in KEGG

(2013) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

Phytochemical Genomics on the Way

(2013) T. Muranaka et al.   PLANT AND CELL PHYSIOLOGY

The Involvement of  -Amyrin 28-Oxidase (CYP716A52v2) in Oleanane-Type Ginsenoside Biosynthesis in Panax ginseng

(2013) J.-Y. Han et al.   PLANT AND CELL PHYSIOLOGY

Saponins Composition of Rhizomes, Taproots, and Lateral Roots of Satsuma-ninjin (Panax japonicus)

(2012) Kouichi Yoshizaki et al.   CHEMICAL & PHARMACEUTICAL BULLETIN

Cytochrome P450 CYP716A53v2 Catalyzes the Formation of Protopanaxatriol from Protopanaxadiol During Ginsenoside Biosynthesis in Panax Ginseng

(2012) Jung-Yeon Han et al.   PLANT AND CELL PHYSIOLOGY

Development of Reproducible EST-derived SSR Markers and Assessment of Genetic Diversity in Panax ginseng Cultivars and Related Species

(2012) Hong-Il Choi et al.   Journal of Ginseng Research

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Ginsenosides from American ginseng: Chemical and pharmacological diversity

(2011) Lian-Wen Qi et al.   PHYTOCHEMISTRY

The Cyt P450 Enzyme CYP716A47 Catalyzes the Formation of Protopanaxadiol from Dammarenediol-II During Ginsenoside Biosynthesis in Panax ginseng

(2011) Jung-Yeon Han et al.   PLANT AND CELL PHYSIOLOGY

An evolutionary view of functional diversity in family 1 glycosyltransferases

(2011) Keiko Yonekura-Sakakibara et al.   PLANT JOURNAL

A web-based resource for the Arabidopsis P450, cytochromes b5, NADPH-cytochrome P450 reductases, and family 1 glycosyltransferases (http://www.P450.kvl.dk)

(2009) Suzanne M. Paquette et al.   PHYTOCHEMISTRY

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Development and mapping of Simple Sequence Repeat markers for pearl millet from data mining of Expressed Sequence Tags

(2008) S Senthilvel et al.   BMC PLANT BIOLOGY

Simple sequence repeat marker development and genetic mapping in quinoa (Chenopodium quinoa Willd.)

(2008) D. E. Jarvis et al.   JOURNAL OF GENETICS

Licorice  -amyrin 11-oxidase, a cytochrome P450 with a key role in the biosynthesis of the triterpene sweetener glycyrrhizin

(2008) H. Seki et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA