High-Throughput Sequencing and De Novo Assembly of Red and Green Forms of the Perilla frutescens var. crispa Transcriptome
出版年份 2015 全文链接
标题
High-Throughput Sequencing and De Novo Assembly of Red and Green Forms of the Perilla frutescens var. crispa Transcriptome
作者
关键词
Transcriptome analysis, Gene ontologies, Gene expression, Sequence assembly tools, BLAST algorithm, Medicinal plants, Biosynthesis, Leaves
出版物
PLoS One
Volume 10, Issue 6, Pages e0129154
出版商
Public Library of Science (PLoS)
发表日期
2015-06-13
DOI
10.1371/journal.pone.0129154
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Gene set by de novo assembly of Perilla species and expression profiling between P. frutescens (L.) var. frutescens and var. crispa
- (2015) Wei Tong et al. GENE
- Essential oils of green and red Perilla frutescens as potential sources of compounds for mosquito management
- (2015) Nurhayat Tabanca et al. INDUSTRIAL CROPS AND PRODUCTS
- A network perspective on nitrogen metabolism from model to crop plants using integrated ‘omics’ approaches
- (2014) Atsushi Fukushima et al. JOURNAL OF EXPERIMENTAL BOTANY
- Analysis of expressed sequence tags from a normalized cDNA library of perilla (Perilla frutescens)
- (2014) Sang-Choon Lee et al. JOURNAL OF PLANT BIOLOGY
- A flavonoid 3-O-glucoside:2″-O-glucosyltransferase responsible for terminal modification of pollen-specific flavonols inArabidopsis thaliana
- (2014) Keiko Yonekura-Sakakibara et al. PLANT JOURNAL
- TCC: an R package for comparing tag count data with robust normalization strategies
- (2013) Jianqiang Sun et al. BMC BIOINFORMATICS
- Bioinformatics challenges in de novo transcriptome assembly using short read sequences in the absence of a reference genome sequence
- (2013) Elsa Góngora-Castillo et al. NATURAL PRODUCT REPORTS
- DDBJ progress report: a new submission system for leading to a correct annotation
- (2013) Takehide Kosuge et al. NUCLEIC ACIDS RESEARCH
- Data, information, knowledge and principle: back to metabolism in KEGG
- (2013) Minoru Kanehisa et al. NUCLEIC ACIDS RESEARCH
- The flavonoid biosynthetic pathway in Arabidopsis: Structural and genetic diversity
- (2013) Kazuki Saito et al. PLANT PHYSIOLOGY AND BIOCHEMISTRY
- Genetic analysis of the metabolome exemplified using a rice population
- (2013) L. Gong et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Dissection of genotype-phenotype associations in rice grains using metabolome quantitative trait loci analysis
- (2012) Fumio Matsuda et al. PLANT JOURNAL
- Development of Transcriptomic Resources for Interrogating the Biosynthesis of Monoterpene Indole Alkaloids in Medicinal Plant Species
- (2012) Elsa Góngora-Castillo et al. PLoS One
- RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome
- (2011) Bo Li et al. BMC BIOINFORMATICS
- Recent advances in the transcriptional regulation of the flavonoid biosynthetic pathway
- (2011) Imène Hichri et al. JOURNAL OF EXPERIMENTAL BOTANY
- Full-length transcriptome assembly from RNA-Seq data without a reference genome
- (2011) Manfred G Grabherr et al. NATURE BIOTECHNOLOGY
- Computational methods for transcriptome annotation and quantification using RNA-seq
- (2011) Manuel Garber et al. NATURE METHODS
- Two glycosyltransferases involved in anthocyanin modification delineated by transcriptome independent component analysis in Arabidopsis thaliana
- (2011) Keiko Yonekura-Sakakibara et al. PLANT JOURNAL
- BioRuby: bioinformatics software for the Ruby programming language
- (2010) N. Goto et al. BIOINFORMATICS
- Abiotic and Biotic Stresses and Changes in the Lignin Content and Composition in Plants
- (2010) Jullyana Cristina Magalhães Silva Moura et al. Journal of Integrative Plant Biology
- A candidate cDNA clone for (−)-limonene-7-hydroxylase from Perilla frutescens
- (2010) Christopher J.D. Mau et al. PHYTOCHEMISTRY
- Evolutionary and comparative analysis of MYB and bHLH plant transcription factors
- (2010) Antje Feller et al. PLANT JOURNAL
- A scaling normalization method for differential expression analysis of RNA-seq data
- (2010) Mark D Robinson et al. GENOME BIOLOGY
- Differential expression analysis for sequence count data
- (2010) Simon Anders et al. GENOME BIOLOGY
- ShortRead: a bioconductor package for input, quality assessment and exploration of high-throughput sequence data
- (2009) M. Morgan et al. BIOINFORMATICS
- edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
- (2009) M. D. Robinson et al. BIOINFORMATICS
- Monoterpene and sesquiterpene synthases and the origin of terpene skeletal diversity in plants
- (2009) Jörg Degenhardt et al. PHYTOCHEMISTRY
- Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
- (2009) Ben Langmead et al. GENOME BIOLOGY
- Differential gene expression profiles of red and green forms of Perilla frutescens leading to comprehensive identification of anthocyanin biosynthetic genes
- (2008) Mami Yamazaki et al. FEBS Journal
- RNA-Seq: a revolutionary tool for transcriptomics
- (2008) Zhong Wang et al. NATURE REVIEWS GENETICS
- Comprehensive Flavonol Profiling and Transcriptome Coexpression Analysis Leading to Decoding Gene-Metabolite Correlations in Arabidopsis
- (2008) K. Yonekura-Sakakibara et al. PLANT CELL
Add your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload NowAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started