Phylogenetic Analyses of Shigella and Enteroinvasive Escherichia coli for the Identification of Molecular Epidemiological Markers: Whole-Genome Comparative Analysis Does Not Support Distinct Genera Designation
出版年份 2016 全文链接
标题
Phylogenetic Analyses of Shigella and Enteroinvasive Escherichia coli for the Identification of Molecular Epidemiological Markers: Whole-Genome Comparative Analysis Does Not Support Distinct Genera Designation
作者
关键词
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出版物
Frontiers in Microbiology
Volume 6, Issue -, Pages -
出版商
Frontiers Media SA
发表日期
2016-01-20
DOI
10.3389/fmicb.2015.01573
参考文献
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- Characterization of an emergent clone of enteroinvasive Escherichia coli circulating in Europe
- (2016) V. Michelacci et al. CLINICAL MICROBIOLOGY AND INFECTION
- Defining the Phylogenomics of Shigella Species: a Pathway to Diagnostics
- (2015) Jason W. Sahl et al. JOURNAL OF CLINICAL MICROBIOLOGY
- Microbial species delineation using whole genome sequences
- (2015) Neha J. Varghese et al. NUCLEIC ACIDS RESEARCH
- Past and future species definitions for Bacteria and Archaea
- (2015) Ramon Rosselló-Móra et al. SYSTEMATIC AND APPLIED MICROBIOLOGY
- Similarity-Based Codes Sequentially Assigned to Ebolavirus Genomes Are Informative of Species Membership, Associated Outbreaks, and Transmission Chains
- (2015) Alexandra J. Weisberg et al. Open Forum Infectious Diseases
- Microbial taxonomy in the post-genomic era: Rebuilding from scratch?
- (2014) Cristiane C. Thompson et al. ARCHIVES OF MICROBIOLOGY
- CanSNPer: a hierarchical genotype classifier of clonal pathogens
- (2014) A. Larkeryd et al. BIOINFORMATICS
- Genomic analysis of the emergence of 20th century epidemic dysentery
- (2014) Laurence Rohmer et al. BMC GENOMICS
- A severe foodborne outbreak of diarrhoea linked to a canteen in Italy caused by enteroinvasive Escherichia coli, an uncommon agent
- (2014) M. ESCHER et al. EPIDEMIOLOGY AND INFECTION
- Rapid detection of Shigella and enteroinvasive Escherichia coli in produce enrichments by a conventional multiplex PCR assay
- (2014) Rachel Binet et al. FOOD MICROBIOLOGY
- Advances in Rapid Detection Methods for Foodborne Pathogens
- (2014) Xihong Zhao et al. JOURNAL OF MICROBIOLOGY AND BIOTECHNOLOGY
- A System to Automatically Classify and Name Any Individual Genome-Sequenced Organism Independently of Current Biological Classification and Nomenclature
- (2014) Haitham Marakeby et al. PLoS One
- The Inference of Gene Trees with Species Trees
- (2014) Gergely J. Szöllősi et al. SYSTEMATIC BIOLOGY
- Bacterial Phylogenetic Reconstruction from Whole Genomes Is Robust to Recombination but Demographic Inference Is Not
- (2014) Jessica Hedge et al. mBio
- The large-scale blast score ratio (LS-BSR) pipeline: a method to rapidly compare genetic content between bacterial genomes
- (2014) Jason W. Sahl et al. PeerJ
- The Comprehensive Antibiotic Resistance Database
- (2013) Andrew G. McArthur et al. ANTIMICROBIAL AGENTS AND CHEMOTHERAPY
- GET_HOMOLOGUES, a Versatile Software Package for Scalable and Robust Microbial Pangenome Analysis
- (2013) Bruno Contreras-Moreira et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- QUAST: quality assessment tool for genome assemblies
- (2013) Alexey Gurevich et al. BIOINFORMATICS
- Evolution of Pan-Genomes of Escherichia coli, Shigella spp., and Salmonella enterica
- (2013) E. N. Gordienko et al. JOURNAL OF BACTERIOLOGY
- The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST)
- (2013) Ross Overbeek et al. NUCLEIC ACIDS RESEARCH
- When Whole-Genome Alignments Just Won't Work: kSNP v2 Software for Alignment-Free SNP Discovery and Phylogenetics of Hundreds of Microbial Genomes
- (2013) Shea N. Gardner et al. PLoS One
- A phylogenomic analysis of Escherichia coli / Shigella group: implications of genomic features associated with pathogenicity and ecological adaptation
- (2012) Yan Zhang et al. BMC EVOLUTIONARY BIOLOGY
- The evolution of the Escherichia coli phylogeny
- (2012) Roy R. Chaudhuri et al. INFECTION GENETICS AND EVOLUTION
- SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
- (2012) Anton Bankevich et al. JOURNAL OF COMPUTATIONAL BIOLOGY
- Shigella sonnei genome sequencing and phylogenetic analysis indicate recent global dissemination from Europe
- (2012) Kathryn E Holt et al. NATURE GENETICS
- Shigella Strains Are Not Clones of Escherichia coli but Sister Species in the Genus Escherichia
- (2012) Guanghong Zuo et al. GENOMICS PROTEOMICS & BIOINFORMATICS
- Development of a duplex real-time PCR for differentiation between E. coli and Shigella spp.
- (2011) M. Pavlovic et al. JOURNAL OF APPLIED MICROBIOLOGY
- Whole-genome phylogeny of Escherichia coli/Shigella group by feature frequency profiles (FFPs)
- (2011) G. E. Sims et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method
- (2011) Dent A. Earl et al. Conservation Genetics Resources
- DendroPy: a Python library for phylogenetic computing
- (2010) J. Sukumaran et al. BIOINFORMATICS
- SolexaQA: At-a-glance quality assessment of Illumina second-generation sequencing data
- (2010) Murray P Cox et al. BMC BIOINFORMATICS
- Etiology of Diarrhea in Older Children, Adolescents and Adults: A Systematic Review
- (2010) Christa L. Fischer Walker et al. PLoS Neglected Tropical Diseases
- Organised Genome Dynamics in the Escherichia coli Species Results in Highly Diverse Adaptive Paths
- (2009) Marie Touchon et al. PLoS Genetics
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