The Use of Transposon Insertion Sequencing to Interrogate the Core Functional Genome of the Legume Symbiont Rhizobium leguminosarum

De NovoCharacterization of Genes That Contribute to High-Level Ciprofloxacin Resistance in Escherichia coli

(2016) Thu Tran et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

The essential genome of Streptococcus agalactiae

(2016) Thomas A. Hooven et al.   BMC GENOMICS

Global Tn-seq analysis of carbohydrate utilization and vertebrate infectivity of Borrelia burgdorferi

(2016) Erin B. Troy et al.   MOLECULAR MICROBIOLOGY

Comprehensive Identification of Meningococcal Genes and Small Noncoding RNAs Required for Host Cell Colonization

(2016) Elena Capel et al.   mBio

High-Throughput Genetic Screens Identify a Large and Diverse Collection of New Sporulation Genes in Bacillus subtilis

(2016) Alexander J. Meeske et al.   PLOS BIOLOGY

Characterization of New Virulence Factors Involved in the Intracellular Growth and Survival of Burkholderia pseudomallei

(2015) Madeleine G. Moule et al.   INFECTION AND IMMUNITY

Essential Genome of the Metabolically Versatile Alphaproteobacterium Rhodopseudomonas palustris

(2015) Kieran B. Pechter et al.   JOURNAL OF BACTERIOLOGY

Transposon Mutagenesis Paired with Deep Sequencing of Caulobacter crescentus under Uranium Stress Reveals Genes Essential for Detoxification and Stress Tolerance

(2015) Mimi C. Yung et al.   JOURNAL OF BACTERIOLOGY

Essential genome ofPseudomonas aeruginosain cystic fibrosis sputum

(2015) Keith H. Turner et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

General and condition-specific essential functions ofPseudomonas aeruginosa

(2015) Samuel A. Lee et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The essential gene set of a photosynthetic organism

(2015) Benjamin E. Rubin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genetic Basis of Persister Tolerance to Aminoglycosides in Escherichia coli

(2015) Yue Shan et al.   mBio

Intrinsic Antimicrobial Resistance Determinants in the Superbug Pseudomonas aeruginosa

(2015) Justine L. Murray et al.   mBio

Essential Genes in the Core Genome of the Human Pathogen Streptococcus pyogenes

(2015) Yoann Le Breton et al.   Scientific Reports

Comprehensive identification of virulence factors required for respiratory melioidosis using Tn-seq mutagenesis

(2015) Maria G. Gutierrez et al.   Frontiers in Cellular and Infection Microbiology

NADPH-generating systems in bacteria and archaea

(2015) Sebastiaan K. Spaans et al.   Frontiers in Microbiology

Mechanisms of Inhibition of Rhizobium etli Pyruvate Carboxylase by l-Aspartate

(2014) Chaiyos Sirithanakorn et al.   BIOCHEMISTRY

Construction of a mariner-based transposon vector for use in insertion sequence mutagenesis in selected members of the Rhizobiaceae

(2014) Benjamin J Perry et al.   BMC MICROBIOLOGY

Physiology, genetics, and biochemistry of carbon metabolism in the alphaproteobacterium Sinorhizobium meliloti

(2014) Barney A. Geddes et al.   CANADIAN JOURNAL OF MICROBIOLOGY

High-Throughput Sequencing of Campylobacter jejuni Insertion Mutant Libraries Reveals mapA as a Fitness Factor for Chicken Colonization

(2014) J. G. Johnson et al.   JOURNAL OF BACTERIOLOGY

Escherichia coli Genes and Pathways Involved in Surviving Extreme Exposure to Ionizing Radiation

(2014) R. T. Byrne et al.   JOURNAL OF BACTERIOLOGY

Genome-Wide Identification of Genes Essential for the Survival of Streptococcus pneumoniae in Human Saliva

(2014) Lilly M. Verhagen et al.   PLoS One

Genome-Wide Identification of Acinetobacter baumannii Genes Necessary for Persistence in the Lung

(2014) N. Wang et al.   mBio

Functional Genomics with a Comprehensive Library of Transposon Mutants for the Sulfate-Reducing Bacterium Desulfovibrio alaskensis G20

(2014) J. V. Kuehl et al.   mBio

Genome-Scale Metabolic Network Validation of Shewanella oneidensis Using Transposon Insertion Frequency Analysis

(2014) Hong Yang et al.   PLoS Computational Biology

Transport and Metabolism in Legume-Rhizobia Symbioses

(2013) Michael Udvardi et al.   Annual Review of Plant Biology

A Hidden Markov Model for identifying essential and growth-defect regions in bacterial genomes from transposon insertion sequencing data

(2013) Michael A DeJesus et al.   BMC BIOINFORMATICS

Identification of Genes Required by Bacillus thuringiensis for Survival in Soil by Transposon-Directed Insertion Site Sequencing

(2013) Alistair H. Bishop et al.   CURRENT MICROBIOLOGY

Transposon insertion sequencing: a new tool for systems-level analysis of microorganisms

(2013) Tim van Opijnen et al.   NATURE REVIEWS MICROBIOLOGY

Identification of T6SS-dependent effector and immunity proteins by Tn-seq in Vibrio cholerae

(2013) T. G. Dong et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Approaches to querying bacterial genomes with transposon-insertion sequencing

(2013) Lars Barquist et al.   RNA Biology

The Serum Resistome of a Globally Disseminated Multidrug Resistant Uropathogenic Escherichia coli Clone

(2013) Minh-Duy Phan et al.   PLoS Genetics

A Comprehensive Analysis of In Vitro and In Vivo Genetic Fitness of Pseudomonas aeruginosa Using High-Throughput Sequencing of Transposon Libraries

(2013) David Skurnik et al.   PLoS Pathogens

Gene Fitness Landscapes of Vibrio cholerae at Important Stages of Its Life Cycle

(2013) Heather D. Kamp et al.   PLoS Pathogens

Genome Scanning for Conditionally Essential Genes in Salmonella enterica Serotype Typhimurium

(2012) Anita Khatiwara et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Genetic analysis reveals links between lipid A structure and expression of the outer membrane protein gene,ropB, inRhizobium leguminosarum

(2012) Elizabeth M. Vanderlinde et al.   FEMS MICROBIOLOGY LETTERS

Anomalies of the anaerobic tricarboxylic acid cycle inShewanella oneidensisrevealed by Tn-seq

(2012) Evan D. Brutinel et al.   MOLECULAR MICROBIOLOGY

Rhizobial communities in symbiosis with legumes: genetic diversity, competition and interactions with host plants

(2012) Jerzy Wielbo   Open Life Sciences

The Rules of Engagement in the Legume-Rhizobial Symbiosis

(2011) Giles E.D. Oldroyd et al.   Annual Review of Genetics

Mutation of the Sensor Kinase chvG in Rhizobium leguminosarum Negatively Impacts Cellular Metabolism, Outer Membrane Stability, and Symbiosis

(2011) E. M. Vanderlinde et al.   JOURNAL OF BACTERIOLOGY

Plasmids with a Chromosome-Like Role in Rhizobia

(2011) C. Landeta et al.   JOURNAL OF BACTERIOLOGY

Mutation of a Broadly Conserved Operon (RL3499-RL3502) from Rhizobium leguminosarum Biovar viciae Causes Defects in Cell Morphology and Envelope Integrity

(2011) E. M. Vanderlinde et al.   JOURNAL OF BACTERIOLOGY

Identifying microbial fitness determinants by insertion sequencing using genome-wide transposon mutant libraries

(2011) Andrew L Goodman et al.   Nature Protocols

Genome-Scale Identification of Resistance Functions in Pseudomonas aeruginosa Using Tn-seq

(2011) L. A. Gallagher et al.   mBio

High-Resolution Phenotypic Profiling Defines Genes Essential for Mycobacterial Growth and Cholesterol Catabolism

(2011) Jennifer E. Griffin et al.   PLoS Pathogens

Identifying Genetic Determinants Needed to Establish a Human Gut Symbiont in Its Habitat

(2009) Andrew L. Goodman et al.   Cell Host & Microbe

Identification of a novel ABC transporter required for desiccation tolerance, and biofilm formation inRhizobium leguminosarumbv.viciae3841

(2009) Elizabeth M. Vanderlinde et al.   FEMS MICROBIOLOGY ECOLOGY

Simultaneous assay of every Salmonella Typhi gene using one million transposon mutants

(2009) G. C. Langridge et al.   GENOME RESEARCH

Characterization of a Gene Family of Outer Membrane Proteins (ropB) in Rhizobium leguminosarum bv. viciae VF39SM and the Role of the Sensor Kinase ChvG in Their Regulation

(2009) D. L. Foreman et al.   JOURNAL OF BACTERIOLOGY

Rhizobium leguminosarum biovar viciae 3841, deficient in 27-hydroxyoctacosanoate-modified lipopolysaccharide, is impaired in desiccation tolerance, biofilm formation and motility

(2009) E. M. Vanderlinde et al.   MICROBIOLOGY-SGM

Tn-seq: high-throughput parallel sequencing for fitness and genetic interaction studies in microorganisms

(2009) Tim van Opijnen et al.   NATURE METHODS

Tracking insertion mutants within libraries by deep sequencing and a genome-wide screen for Haemophilus genes required in the lung

(2009) J. D. Gawronski et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Discoveries in Bacterial Nucleotide Metabolism

(2008) Robert L. Switzer   JOURNAL OF BIOLOGICAL CHEMISTRY