标题
Epigenomic landscapes of retinal rods and cones
作者
关键词
-
出版物
eLife
Volume 5, Issue -, Pages -
出版商
eLife Sciences Organisation, Ltd.
发表日期
2016-03-07
DOI
10.7554/elife.11613
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Massively parallel cis -regulatory analysis in the mammalian central nervous system
- (2015) Susan Q. Shen et al. GENOME RESEARCH
- Human body epigenome maps reveal noncanonical DNA methylation variation
- (2015) Matthew D. Schultz et al. NATURE
- A method to predict the impact of regulatory variants from DNA sequence
- (2015) Dongwon Lee et al. NATURE GENETICS
- Epigenomic Signatures of Neuronal Diversity in the Mammalian Brain
- (2015) Alisa Mo et al. NEURON
- DNase I hypersensitivity analysis of the mouse brain and retina identifies region-specific regulatory elements
- (2015) Matthew S Wilken et al. Epigenetics & Chromatin
- Identification of Predictive Cis-Regulatory Elements Using a Discriminative Objective Function and a Dynamic Search Space
- (2015) Rahul Karnik et al. PLoS One
- Divergent functions of hematopoietic transcription factors in lineage priming and differentiation during erythro-megakaryopoiesis
- (2014) Maxim Pimkin et al. GENOME RESEARCH
- A comparative encyclopedia of DNA elements in the mouse genome
- (2014) Feng Yue et al. NATURE
- A Bayesian hierarchical model to detect differentially methylated loci from single nucleotide resolution sequencing data
- (2014) Hao Feng et al. NUCLEIC ACIDS RESEARCH
- Otx2 ChIP-seq Reveals Unique and Redundant Functions in the Mature Mouse Retina
- (2014) Alexander Samuel et al. PLoS One
- Onecut1 and Onecut2 redundantly regulate early retinal cell fates during development
- (2014) Darshan Sapkota et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Enhanced Regulatory Sequence Prediction Using Gapped k-mer Features
- (2014) Mahmoud Ghandi et al. PLoS Computational Biology
- EBSeq: an empirical Bayes hierarchical model for inference in RNA-seq experiments
- (2013) Ning Leng et al. BIOINFORMATICS
- Developmental Fate and Cellular Maturity Encoded in Human Regulatory DNA Landscapes
- (2013) Andrew B. Stergachis et al. CELL
- Epigenomic Analysis of Multilineage Differentiation of Human Embryonic Stem Cells
- (2013) Wei Xie et al. CELL
- Otx2 and Onecut1 Promote the Fates of Cone Photoreceptors and Horizontal Cells and Repress Rod Photoreceptors
- (2013) Mark M. Emerson et al. DEVELOPMENTAL CELL
- Charting a dynamic DNA methylation landscape of the human genome
- (2013) Michael J. Ziller et al. NATURE
- Photoreceptor precursors derived from three-dimensional embryonic stem cell cultures integrate and mature within adult degenerate retina
- (2013) Anai Gonzalez-Cordero et al. NATURE BIOTECHNOLOGY
- Epigenetic memory at embryonic enhancers identified in DNA methylation maps from adult mouse tissues
- (2013) Gary C Hon et al. NATURE GENETICS
- Refined DNase-seq protocol and data analysis reveals intrinsic bias in transcription factor footprint identification
- (2013) Housheng Hansen He et al. NATURE METHODS
- Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position
- (2013) Jason D Buenrostro et al. NATURE METHODS
- Aquaporin water channels in the nervous system
- (2013) Marios C. Papadopoulos et al. NATURE REVIEWS NEUROSCIENCE
- Identification of active regulatory regions from DNA methylation data
- (2013) Lukas Burger et al. NUCLEIC ACIDS RESEARCH
- Global Epigenomic Reconfiguration During Mammalian Brain Development
- (2013) R. Lister et al. SCIENCE
- A novel methyl-binding domain protein enrichment method for identifying genome-wide tissue-specific DNA methylation from nanogram DNA samples
- (2013) Verity F Oliver et al. Epigenetics & Chromatin
- Base-Resolution Analyses of Sequence and Parent-of-Origin Dependent DNA Methylation in the Mouse Genome
- (2012) Wei Xie et al. CELL
- Integration of ChIP-seq and machine learning reveals enhancers and a predictive regulatory sequence vocabulary in melanocytes
- (2012) D. U. Gorkin et al. GENOME RESEARCH
- A High-Throughput Chromatin Immunoprecipitation Approach Reveals Principles of Dynamic Gene Regulation in Mammals
- (2012) Manuel Garber et al. MOLECULAR CELL
- Differential oestrogen receptor binding is associated with clinical outcome in breast cancer
- (2012) Caryn S. Ross-Innes et al. NATURE
- A map of the cis-regulatory sequences in the mouse genome
- (2012) Yin Shen et al. NATURE
- The accessible chromatin landscape of the human genome
- (2012) Robert E. Thurman et al. NATURE
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- Transcriptional code and disease map for adult retinal cell types
- (2012) Sandra Siegert et al. NATURE NEUROSCIENCE
- Cell-Specific DNA Methylation Patterns of Retina-Specific Genes
- (2012) Shannath L. Merbs et al. PLoS One
- High Resolution Genome Wide Binding Event Finding and Motif Discovery Reveals Transcription Factor Spatial Binding Constraints
- (2012) Yuchun Guo et al. PLoS Computational Biology
- Transcriptional Regulation of Rod Photoreceptor Homeostasis Revealed by In Vivo NRL Targetome Analysis
- (2012) Hong Hao et al. PLoS Genetics
- An encyclopedia of mouse DNA elements (Mouse ENCODE)
- (2012) et al. GENOME BIOLOGY
- RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome
- (2011) Bo Li et al. BMC BIOINFORMATICS
- Rod and Cone Visual Pigments and Phototransduction through Pharmacological, Genetic, and Physiological Approaches
- (2011) Vladimir J. Kefalov JOURNAL OF BIOLOGICAL CHEMISTRY
- DNA-binding factors shape the mouse methylome at distal regulatory regions
- (2011) Michael B. Stadler et al. NATURE
- BEDTools: a flexible suite of utilities for comparing genomic features
- (2010) Aaron R. Quinlan et al. BIOINFORMATICS
- CRX ChIP-seq reveals the cis-regulatory architecture of mouse photoreceptors
- (2010) J. C. Corbo et al. GENOME RESEARCH
- GREAT improves functional interpretation of cis-regulatory regions
- (2010) Cory Y McLean et al. NATURE BIOTECHNOLOGY
- Photoreceptor degeneration: genetic and mechanistic dissection of a complex trait
- (2010) Alan F. Wright et al. NATURE REVIEWS GENETICS
- Transcriptional regulation of photoreceptor development and homeostasis in the mammalian retina
- (2010) Anand Swaroop et al. NATURE REVIEWS NEUROSCIENCE
- In Vivo Chromatin Organization of Mouse Rod Photoreceptors Correlates with Histone Modifications
- (2010) Caroline Kizilyaprak et al. PLoS One
- Analysis of Thyroid Response Element Activity during Retinal Development
- (2010) Nathan A. Billings et al. PLoS One
- Differential expression analysis for sequence count data
- (2010) Simon Anders et al. GENOME BIOLOGY
- A clustering approach for identification of enriched domains from histone modification ChIP-Seq data
- (2009) Chongzhi Zang et al. BIOINFORMATICS
- TopHat: discovering splice junctions with RNA-Seq
- (2009) Cole Trapnell et al. BIOINFORMATICS
- Nuclear Architecture of Rod Photoreceptor Cells Adapts to Vision in Mammalian Evolution
- (2009) Irina Solovei et al. CELL
- Transplantation of Human Embryonic Stem Cell-Derived Photoreceptors Restores Some Visual Function in Crx-Deficient Mice
- (2009) Deepak A. Lamba et al. Cell Stem Cell
- Human DNA methylomes at base resolution show widespread epigenomic differences
- (2009) Ryan Lister et al. NATURE
- Pias3-Dependent SUMOylation Directs Rod Photoreceptor Development
- (2009) Akishi Onishi et al. NEURON
- Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
- (2009) Ben Langmead et al. GENOME BIOLOGY
- Highly Integrated Single-Base Resolution Maps of the Epigenome in Arabidopsis
- (2008) Ryan Lister et al. CELL
- Model-based Analysis of ChIP-Seq (MACS)
- (2008) Yong Zhang et al. GENOME BIOLOGY
Create your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create NowAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started