Otx2 ChIP-seq Reveals Unique and Redundant Functions in the Mature Mouse Retina

MotifLab: a tools and data integration workbench for motif discovery and regulatory sequence analysis

(2013) Kjetil Klepper et al.   BMC BIOINFORMATICS

Loss of Otx2 in the Adult Retina Disrupts Retinal Pigment Epithelium Function, Causing Photoreceptor Degeneration

(2013) M. Housset et al.   JOURNAL OF NEUROSCIENCE

Chromatin dynamics during cellular reprogramming

(2013) Effie Apostolou et al.   NATURE

Identification of cis-regulatory modules in promoters of human genes exploiting mutual positioning of transcription factors

(2013) Soumyadeep Nandi et al.   NUCLEIC ACIDS RESEARCH

Regeneration of Cone Photoreceptors when Cell Ablation Is Primarily Restricted to a Particular Cone Subtype

(2013) Brittany Fraser et al.   PLoS One

Massively parallel in vivo enhancer assay reveals that highly local features determine the cis-regulatory function of ChIP-seq peaks

(2013) M. A. White et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Lens and retina regeneration: new perspectives from model organisms

(2012) Karla Barbosa-Sabanero et al.   BIOCHEMICAL JOURNAL

Identifying ChIP-seq enrichment using MACS

(2012) Jianxing Feng et al.   Nature Protocols

Brief Report: Self-Organizing Neuroepithelium from Human Pluripotent Stem Cells Facilitates Derivation of Photoreceptors

(2012) Cédric Boucherie et al.   STEM CELLS

MEME-ChIP: motif analysis of large DNA datasets

(2011) Philip Machanick et al.   BIOINFORMATICS

OTX2 and CRX rescue overlapping and photoreceptor-specific functions in theDrosophilaeye

(2011) David Terrell et al.   DEVELOPMENTAL DYNAMICS

Mutant Prpf31 causes pre-mRNA splicing defects and rod photoreceptor cell degeneration in a zebrafish model for Retinitis pigmentosa

(2011) Jun Yin et al.   Molecular Neurodegeneration

A 350 bp region of the proximal promoter of Rds drives cell-type specific gene expression

(2010) Xue Cai et al.   EXPERIMENTAL EYE RESEARCH

CRX ChIP-seq reveals the cis-regulatory architecture of mouse photoreceptors

(2010) J. C. Corbo et al.   GENOME RESEARCH

Simple Combinations of Lineage-Determining Transcription Factors Prime cis-Regulatory Elements Required for Macrophage and B Cell Identities

(2010) Sven Heinz et al.   MOLECULAR CELL

Genome-wide analysis of POU3F2/BRN2 promoter occupancy in human melanoma cells reveals Kitl as a novel regulated target gene

(2010) Dominique Kobi et al.   Pigment Cell & Melanoma Research

In Vivo Chromatin Organization of Mouse Rod Photoreceptors Correlates with Histone Modifications

(2010) Caroline Kizilyaprak et al.   PLoS One

Otx2 Gene Deletion in Adult Mouse Retina Induces Rapid RPE Dystrophy and Slow Photoreceptor Degeneration

(2010) Francis Béby et al.   PLoS One

G+C content dominates intrinsic nucleosome occupancy

(2009) Desiree Tillo et al.   BMC BIOINFORMATICS

Nuclear Architecture of Rod Photoreceptor Cells Adapts to Vision in Mammalian Evolution

(2009) Irina Solovei et al.   CELL

Regulation of photoreceptor gene expression by Crx-associated transcription factor network

(2007) Anne K. Hennig et al.   BRAIN RESEARCH