Distinct Effects of p19 RNA Silencing Suppressor on Small RNA Mediated Pathways in Plants

Identification of Nicotiana benthamiana microRNAs and their targets using high throughput sequencing and degradome analysis

(2015) Ivett Baksa et al.   BMC GENOMICS

Antiviral roles of plant ARGONAUTES

(2015) Alberto Carbonell et al.   CURRENT OPINION IN PLANT BIOLOGY

Evolution, functions, and mysteries of plant ARGONAUTE proteins

(2015) Han Zhang et al.   CURRENT OPINION IN PLANT BIOLOGY

RNA Pol IV and V in gene silencing: Rebel polymerases evolving away from Pol II's rules

(2015) Ming Zhou et al.   CURRENT OPINION IN PLANT BIOLOGY

Small-RNA loading licenses Argonaute for assembly into a transcriptional silencing complex

(2015) Daniel Holoch et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Functional dissection of a plant Argonaute

(2015) Károly Fátyol et al.   NUCLEIC ACIDS RESEARCH

Homeologs of theNicotiana benthamianaAntiviral ARGONAUTE1 Show Different Susceptibilities to microRNA168-Mediated Control

(2015) Torsten Gursinsky et al.   PLANT PHYSIOLOGY

Transgenic down-regulation of ARGONAUTE2 expression in Nicotiana benthamiana interferes with several layers of antiviral defenses

(2015) Denis Odokonyero et al.   VIROLOGY

viral silencing suppressors: Tools forged to fine-tune host-pathogen coexistence

(2015) Tibor Csorba et al.   VIROLOGY

Small-RNA loading licenses Argonaute for assembly into a transcriptional silencing complex

(2015) Daniel Holoch et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Roles and Programming of Arabidopsis ARGONAUTE Proteins during Turnip Mosaic Virus Infection

(2015) Hernan Garcia-Ruiz et al.   PLoS Pathogens

Interaction between viral RNA silencing suppressors and host factors in plant immunity

(2014) Kenji S Nakahara et al.   CURRENT OPINION IN PLANT BIOLOGY

Different roles for RNA silencing and RNA processing components in virus recovery and virus-induced gene silencing in plants

(2014) Xiaofang Ma et al.   JOURNAL OF EXPERIMENTAL BOTANY

Tomato ringspot virus Coat Protein Binds to ARGONAUTE 1 and Suppresses the Translation Repression of a Reporter Gene

(2014) Rajita A. Karran et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

RNA-directed DNA methylation: an epigenetic pathway of increasing complexity

(2014) Marjori A. Matzke et al.   NATURE REVIEWS GENETICS

Temperature-dependent symptom recovery in Nicotiana benthamiana plants infected with tomato ringspot virus is associated with reduced translation of viral RNA2 and requires ARGONAUTE 1

(2014) Basudev Ghoshal et al.   VIROLOGY

ARGONAUTE PIWI domain and microRNA duplex structure regulate small RNA sorting in Arabidopsis

(2014) Xiaoming Zhang et al.   Nature Communications

Unrelated viral suppressors of RNA silencing mediate the control of ARGONAUTE1 level

(2013) Éva Várallyay et al.   MOLECULAR PLANT PATHOLOGY

RNA silencing suppression by plant pathogens: defence, counter-defence and counter-counter-defence

(2013) Nathan Pumplin et al.   NATURE REVIEWS MICROBIOLOGY

Independent parallel functions of p19 plant viral suppressor of RNA silencing required for effective suppressor activity

(2013) Éva Várallyay et al.   NUCLEIC ACIDS RESEARCH

Lessons on RNA Silencing Mechanisms in Plants from Eukaryotic Argonaute Structures

(2013) Christian Poulsen et al.   PLANT CELL

De Novo Transcriptome Sequence Assembly and Analysis of RNA Silencing Genes of Nicotiana benthamiana

(2013) Kenlee Nakasugi et al.   PLoS One

The UEA sRNA workbench: a suite of tools for analysing and visualizing next generation sequencing microRNA and small RNA datasets

(2012) M. B. Stocks et al.   BIOINFORMATICS

Differential effects of viral silencing suppressors on siRNA and miRNA loading support the existence of two distinct cellular pools of ARGONAUTE1

(2012) Gregory Schott et al.   EMBO JOURNAL

Temperature-Dependent Survival of Turnip Crinkle Virus-Infected Arabidopsis Plants Relies on an RNA Silencing-Based Defense That Requires DCL2, AGO2, and HEN1

(2012) X. Zhang et al.   JOURNAL OF VIROLOGY

A Draft Genome Sequence of Nicotiana benthamiana to Enhance Molecular Plant-Microbe Biology Research

(2012) Aureliano Bombarely et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Suppression of Arabidopsis ARGONAUTE1-Mediated Slicing, Transgene-Induced RNA Silencing, and DNA Methylation by Distinct Domains of the Cucumber mosaic virus 2b Protein

(2012) C.-G. Duan et al.   PLANT CELL

Functional Analysis of Three Arabidopsis ARGONAUTES Using Slicer-Defective Mutants

(2012) A. Carbonell et al.   PLANT CELL

Viral RNAi Suppressor Reversibly Binds siRNA to Outcompete Dicer and RISC via Multiple Turnover

(2011) Renata A. Rawlings et al.   JOURNAL OF MOLECULAR BIOLOGY

The 21-Nucleotide, but Not 22-Nucleotide, Viral Secondary Small Interfering RNAs Direct Potent Antiviral Defense by Two Cooperative Argonautes inArabidopsis thaliana

(2011) Xian-Bing Wang et al.   PLANT CELL

ARGONAUTE2 Mediates RNA-Silencing Antiviral Defenses against Potato virus X in Arabidopsis

(2011) M. Jaubert et al.   PLANT PHYSIOLOGY

Identification of an ARGONAUTE for Antiviral RNA Silencing in Nicotiana benthamiana

(2011) H. B. Scholthof et al.   PLANT PHYSIOLOGY

An Antiviral Defense Role of AGO2 in Plants

(2011) Jagger J. W. Harvey et al.   PLoS One

Specific requirement of DRB4, a dsRNA-binding protein, for the in vitro dsRNA-cleaving activity of Arabidopsis Dicer-like 4

(2011) A. Fukudome et al.   RNA

Misregulation of AUXIN RESPONSE FACTOR 8 Underlies the Developmental Abnormalities Caused by Three Distinct Viral Silencing Suppressors in Arabidopsis

(2011) Florence Jay et al.   PLoS Pathogens

A Viral Satellite RNA Induces Yellow Symptoms on Tobacco by Targeting a Gene Involved in Chlorophyll Biosynthesis using the RNA Silencing Machinery

(2011) Hanako Shimura et al.   PLoS Pathogens

Silencing signals in plants: a long journey for small RNAs

(2011) Attila Molnar et al.   GENOME BIOLOGY

Plant virus-mediated induction of miR168 is associated with repression of ARGONAUTE1 accumulation

(2010) Éva Várallyay et al.   EMBO JOURNAL

Antiviral Role of Plant-Encoded RNA-Dependent RNA Polymerases Revisited with Deep Sequencing of Small Interfering RNAs of Virus Origin

(2010) Feng Qu   MOLECULAR PLANT-MICROBE INTERACTIONS

Polerovirus protein P0 prevents the assembly of small RNA-containing RISC complexes and leads to degradation of ARGONAUTE1

(2010) Tibor Csorba et al.   PLANT JOURNAL

Small RNA Duplexes Function as Mobile Silencing Signals Between Plant Cells

(2010) P. Dunoyer et al.   SCIENCE

Small Silencing RNAs in Plants Are Mobile and Direct Epigenetic Modification in Recipient Cells

(2010) A. Molnar et al.   SCIENCE

Structural and Functional Analysis of Viral siRNAs

(2010) Gyorgy Szittya et al.   PLoS Pathogens

Roles of Plant Small RNAs in Biotic Stress Responses

(2009) Virginia Ruiz-Ferrer et al.   Annual Review of Plant Biology

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

The Arabidopsis thaliana double-stranded RNA binding protein DRB1 directs guide strand selection from microRNA duplexes

(2009) A. L. Eamens et al.   RNA

Deep-sequencing of plant viral small RNAs reveals effective and widespread targeting of viral genomes

(2009) Livia Donaire et al.   VIROLOGY

PatMaN: rapid alignment of short sequences to large databases

(2008) Kay Prüfer et al.   BIOINFORMATICS

Sorting of Small RNAs into Arabidopsis Argonaute Complexes Is Directed by the 5′ Terminal Nucleotide

(2008) Shijun Mi et al.   CELL

A cautionary note on pathogen-derived sequences

(2008) Alessandra Lucioli et al.   NATURE BIOTECHNOLOGY

Inhibition of 3' modification of small RNAs in virus-infected plants require spatial and temporal co-expression of small RNAs and viral silencing-suppressor proteins

(2008) R. Lozsa et al.   NUCLEIC ACIDS RESEARCH

The Mechanism Selecting the Guide Strand from Small RNA Duplexes is Different Among Argonaute Proteins

(2008) Atsushi Takeda et al.   PLANT AND CELL PHYSIOLOGY

Arabidopsis DRB4, AGO1, AGO7, and RDR6 participate in a DCL4-initiated antiviral RNA silencing pathway negatively regulated by DCL1

(2008) F. Qu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA