The Impact of 18 Ancestral and Horizontally-Acquired Regulatory Proteins upon the Transcriptome and sRNA Landscape of Salmonella enterica serovar Typhimurium

Pathogen Cell-to-Cell Variability Drives Heterogeneity in Host Immune Responses

(2015) Roi Avraham et al.   CELL

Small RNA-based feedforward loop with AND-gate logic regulates extrachromosomal DNA transfer inSalmonella

(2015) Kai Papenfort et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Characterization of the Escherichia coli σS core regulon by Chromatin Immunoprecipitation-sequencing (ChIP-seq) analysis

(2015) Clelia Peano et al.   Scientific Reports

RNA-seq Brings New Insights to the Intra-Macrophage Transcriptome of Salmonella Typhimurium

(2015) Shabarinath Srikumar et al.   PLoS Pathogens

Regulatory principles governing Salmonella and Yersinia virulence

(2015) Marc Erhardt et al.   Frontiers in Microbiology

Genomic Targets and Features of BarA-UvrY (-SirA) Signal Transduction Systems

(2015) Tesfalem R. Zere et al.   PLoS One

MicL, a new  E-dependent sRNA, combats envelope stress by repressing synthesis of Lpp, the major outer membrane lipoprotein

(2014) M. S. Guo et al.   GENES & DEVELOPMENT

The Iron-Sensing Fur Regulator Controls Expression Timing and Levels of Salmonella Pathogenicity Island 2 Genes in the Course of Environmental Acidification

(2014) E. Choi et al.   INFECTION AND IMMUNITY

Two-Component Regulators ControlhilAExpression by ControllingfimZandhilEExpression within Salmonella enterica Serovar Typhimurium

(2014) M. Aaron Baxter et al.   INFECTION AND IMMUNITY

The Salmonella Spi1 Virulence Regulatory Protein HilD Directly Activates Transcription of the Flagellar Master Operon flhDC

(2014) H. M. Singer et al.   JOURNAL OF BACTERIOLOGY

Expanding the RpoS/σS-Network by RNA Sequencing and Identification of σS-Controlled Small RNAs in Salmonella

(2014) Corinne Lévi-Meyrueis et al.   PLoS One

Bacterial Regulon Evolution: Distinct Responses and Roles for the Identical OmpR Proteins of Salmonella Typhimurium and Escherichia coli in the Acid Stress Response

(2014) Heather J. Quinn et al.   PLoS Genetics

An Infection-Relevant Transcriptomic Compendium for Salmonella enterica Serovar Typhimurium

(2013) Carsten Kröger et al.   Cell Host & Microbe

Salmonella enterica Serovar Typhimurium Skills To Succeed in the Host: Virulence and Regulation

(2013) A. Fabrega et al.   CLINICAL MICROBIOLOGY REVIEWS

Expanding control in bacteria: interplay between small RNAs and transcriptional regulators to control gene expression

(2013) Pierre Mandin et al.   CURRENT OPINION IN MICROBIOLOGY

Stabilization of cooperative virulence by the expression of an avirulent phenotype

(2013) Médéric Diard et al.   NATURE

Rapid and robust signaling in the CsrA cascade via RNA-protein interactions and feedback regulation

(2013) D. N. Adamson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Cycling of RNAs on Hfq

(2013) E. Gerhart H. Wagner   RNA Biology

An RpoS-dependent sRNA regulates the expression of a chaperone involved in protein folding

(2013) I. J. Silva et al.   RNA

Comprehensive Assignment of Roles for Salmonella Typhimurium Genes in Intestinal Colonization of Food-Producing Animals

(2013) Roy R. Chaudhuri et al.   PLoS Genetics

An atlas of Hfq-bound transcripts reveals 3′ UTRs as a genomic reservoir of regulatory small RNAs

(2012) Yanjie Chao et al.   EMBO JOURNAL

Invasive non-typhoidal salmonella disease: an emerging and neglected tropical disease in Africa

(2012) Nicholas A Feasey et al.   LANCET

ChIP-seq and transcriptome analysis of the OmpR regulon ofSalmonella entericaserovars Typhi and Typhimurium reveals accessory genes implicated in host colonization

(2012) Timothy T. Perkins et al.   MOLECULAR MICROBIOLOGY

The transcriptional landscape and small RNAs of Salmonella enterica serovar Typhimurium

(2012) C. Kroger et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Measurement of mRNA abundance using RNA-seq data: RPKM measure is inconsistent among samples

(2012) Günter P. Wagner et al.   THEORY IN BIOSCIENCES

A Fundamental Regulatory Mechanism Operating through OmpR and DNA Topology Controls Expression of Salmonella Pathogenicity Islands SPI-1 and SPI-2

(2012) Andrew D. S. Cameron et al.   PLoS Genetics

The Fur regulon in anaerobically grown Salmonella enterica sv. Typhimurium: identification of new Fur targets

(2011) Bryan Troxell et al.   BMC MICROBIOLOGY

Network-based functional modeling of genomics, transcriptomics and metabolism in bacteria

(2011) Lore Cloots et al.   CURRENT OPINION IN MICROBIOLOGY

Rewiring two-component signal transduction with small RNAs

(2011) Yvonne Göpel et al.   CURRENT OPINION IN MICROBIOLOGY

Integrating Global Regulatory Input Into theSalmonellaPathogenicity Island 1 Type III Secretion System

(2011) Yekaterina A. Golubeva et al.   GENETICS

The streptomycin mouse model for Salmonella diarrhea: functional analysis of the microbiota, the pathogen’s virulence factors, and the host’s mucosal immune response

(2011) Patrick Kaiser et al.   IMMUNOLOGICAL REVIEWS

Integration of a complex regulatory cascade involving the SirA/BarA and Csr global regulatory systems that controls expression of the Salmonella SPI-1 and SPI-2 virulence regulons through HilD

(2011) Luary C. Martínez et al.   MOLECULAR MICROBIOLOGY

Hfq and its constellation of RNA

(2011) Jörg Vogel et al.   NATURE REVIEWS MICROBIOLOGY

A conserved RpoS-dependent small RNA controls the synthesis of major porin OmpD

(2011) Kathrin S. Fröhlich et al.   NUCLEIC ACIDS RESEARCH

Transcriptional Priming of Salmonella Pathogenicity Island-2 Precedes Cellular Invasion

(2011) Suzanne E. Osborne et al.   PLoS One

Fur Activates the Expression of Salmonella enterica Pathogenicity Island 1 by Directly Interacting with the hilD Operator In Vivo and In Vitro

(2011) Laura Teixidó et al.   PLoS One

The Cost of Virulence: Retarded Growth of Salmonella Typhimurium Cells Expressing Type III Secretion System 1

(2011) Alexander Sturm et al.   PLoS Pathogens

The Global Burden of NontyphoidalSalmonellaGastroenteritis

(2010) Shannon E. Majowicz et al.   CLINICAL INFECTIOUS DISEASES

Discovery of Novel Secreted Virulence Factors fromSalmonella entericaSerovar Typhimurium by Proteomic Analysis of Culture Supernatants

(2010) George S. Niemann et al.   INFECTION AND IMMUNITY

FliZ Regulates Expression of the Salmonella Pathogenicity Island 1 Invasion Locus by Controlling HilD Protein Activity in Salmonella enterica Serovar Typhimurium

(2010) J. E. C. Chubiz et al.   JOURNAL OF BACTERIOLOGY

Fur Negatively Regulates hns and Is Required for the Expression of HilA and Virulence in Salmonella enterica Serovar Typhimurium

(2010) B. Troxell et al.   JOURNAL OF BACTERIOLOGY

Genome-wide analysis of the H-NS and Sfh regulatory networks in Salmonella Typhimurium identifies a plasmid-encoded transcription silencing mechanism

(2010) Shane C. Dillon et al.   MOLECULAR MICROBIOLOGY

Identification of the Regulatory Logic Controlling Salmonella Pathoadaptation by the SsrA-SsrB Two-Component System

(2010) Ana M. Tomljenovic-Berube et al.   PLoS Genetics

RNA-Seq gene expression estimation with read mapping uncertainty

(2009) Bo Li et al.   BIOINFORMATICS

Control of Salmonella pathogenicity island-2 gene expression

(2009) Ephraim Fass et al.   CURRENT OPINION IN MICROBIOLOGY

Regulation of Salmonella enterica Pathogenicity Island 1 by DNA Adenine Methylation

(2009) J. Lopez-Garrido et al.   GENETICS

This Is Not Your Mother's Repressor: the Complex Role of Fur in Pathogenesis

(2009) B. M. Carpenter et al.   INFECTION AND IMMUNITY

Fast Mapping of Short Sequences with Mismatches, Insertions and Deletions Using Index Structures

(2009) Steve Hoffmann et al.   PLoS Computational Biology

Coordinated Regulation of Virulence during Systemic Infection of Salmonella enterica Serovar Typhimurium

(2009) Hyunjin Yoon et al.   PLoS Pathogens

During infection of epithelial cells Salmonella enterica serovar Typhimurium undergoes a time-dependent transcriptional adaptation that results in simultaneous expression of three type 3 secretion systems

(2008) I. Hautefort et al.   CELLULAR MICROBIOLOGY

Clocks and switches: bacterial gene regulation by DNA adenine methylation

(2008) David A Low et al.   CURRENT OPINION IN MICROBIOLOGY

FliZ Is a Posttranslational Activator of FlhD4C2-Dependent Flagellar Gene Expression

(2008) S. Saini et al.   JOURNAL OF BACTERIOLOGY

Coordinated Regulation of Expression of Salmonella Pathogenicity Island 1 and Flagellar Type III Secretion Systems by ATP-Dependent ClpXP Protease

(2008) H. Kage et al.   JOURNAL OF BACTERIOLOGY

Overcoming H-NS-mediated Transcriptional Silencing of Horizontally Acquired Genes by the PhoP and SlyA Proteins inSalmonella enterica

(2008) J. Christian Perez et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Anti-silencing: overcoming H-NS-mediated repression of transcription in Gram-negative enteric bacteria

(2008) D. M. Stoebel et al.   MICROBIOLOGY-SGM

A rough guide to the non-coding RNA world ofSalmonella

(2008) Jörg Vogel   MOLECULAR MICROBIOLOGY

Self-destructive cooperation mediated by phenotypic noise

(2008) Martin Ackermann et al.   NATURE

Small RNAs encoded within genetic islands of Salmonella typhimurium show host-induced expression and role in virulence

(2008) Gilly Padalon-Brauch et al.   NUCLEIC ACIDS RESEARCH

HilD-mediated transcriptional cross-talk between SPI-1 and SPI-2

(2008) V. H. Bustamante et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Deep Sequencing Analysis of Small Noncoding RNA and mRNA Targets of the Global Post-Transcriptional Regulator, Hfq

(2008) Alexandra Sittka et al.   PLoS Genetics