H3 Histone Tail Conformation within the Nucleosome and the Impact of K14 Acetylation Studied Using Enhanced Sampling Simulation

Opposing roles of H3- and H4-acetylation in the regulation of nucleosome structure—a FRET study

(2015) Alexander Gansen et al.   NUCLEIC ACIDS RESEARCH

Two Arginine Residues Suppress the Flexibility of Nucleosomal DNA in the Canonical Nucleosome Core

(2015) Hidetoshi Kono et al.   PLoS One

Histone H3 Lysine 14 (H3K14) Acetylation Facilitates DNA Repair in a Positioned Nucleosome by Stabilizing the Binding of the Chromatin Remodeler RSC (Remodels Structure of Chromatin)

(2014) Ming-Rui Duan et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Adaptive lambda square dynamics simulation: An efficient conformational sampling method for biomolecules

(2013) Jinzen Ikebe et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

Histone H3 and H4 N-Terminal Tails in Nucleosome Arrays at Cellular Concentrations Probed by Magic Angle Spinning NMR Spectroscopy

(2013) Min Gao et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

The double PHD finger domain of MOZ/MYST3 induces  -helical structure of the histone H3 tail to facilitate acetylation and methylation sampling and modification

(2013) I. Dreveny et al.   NUCLEIC ACIDS RESEARCH

Unwrapping of Nucleosomal DNA Ends: A Multiscale Molecular Dynamics Study

(2012) Karine Voltz et al.   BIOPHYSICAL JOURNAL

Modelling chromatin structure and dynamics: status and prospects

(2012) Nikolay Korolev et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Histone H4 K16Q Mutation, an Acetylation Mimic, Causes Structural Disorder of Its N-Terminal Basic Patch in the Nucleosome

(2012) Bing-Rui Zhou et al.   JOURNAL OF MOLECULAR BIOLOGY

Regulation of chromatin by histone modifications

(2011) Andrew J Bannister et al.   CELL RESEARCH

Derivatives of molecular surface area and volume: Simple and exact analytical formulas

(2011) Konstantin V. Klenin et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

Energy Landscape Analyses of Disordered Histone Tails Reveal Special Organization of Their Conformational Dynamics

(2011) Davit A. Potoyan et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Theory for trivial trajectory parallelization of multicanonical molecular dynamics and application to a polypeptide in water

(2010) Jinzen Ikebe et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

A Tale of Tails: How Histone Tails Mediate Chromatin Compaction in Different Salt and Linker Histone Environments†

(2009) Gaurav Arya et al.   JOURNAL OF PHYSICAL CHEMISTRY A

Determination of Alkali and Halide Monovalent Ion Parameters for Use in Explicitly Solvated Biomolecular Simulations

(2008) In Suk Joung et al.   JOURNAL OF PHYSICAL CHEMISTRY B