Structural dissection of a complexBacteroides ovatusgene locus conferring xyloglucan metabolism in the human gut

Learning from microbial strategies for polysaccharide degradation

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Molecular Dissection of Xyloglucan Recognition in a Prominent Human Gut Symbiont

(2016) Alexandra S. Tauzin et al.   mBio

Generation and structural validation of a library of diverse xyloglucan-derived oligosaccharides, including an update on xyloglucan nomenclature

(2015) Sami T. Tuomivaara et al.   CARBOHYDRATE RESEARCH

Antibiotics, Pediatric Dysbiosis, and Disease

(2015) Pajau Vangay et al.   Cell Host & Microbe

The intestinal microbiota: its role in health and disease

(2015) Luc Biedermann et al.   EUROPEAN JOURNAL OF PEDIATRICS

Fecal microbiota transplantation forClostridium difficileinfection: back to the future

(2015) Guglielmo Borgia et al.   EXPERT OPINION ON BIOLOGICAL THERAPY

Species-Specific Dynamic Responses of Gut Bacteria to a Mammalian Glycan

(2015) Varsha Raghavan et al.   JOURNAL OF BACTERIOLOGY

Human gut Bacteroidetes can utilize yeast mannan through a selfish mechanism

(2015) Fiona Cuskin et al.   NATURE

Glycan complexity dictates microbial resource allocation in the large intestine

(2015) Artur Rogowski et al.   Nature Communications

High-resolution crystal structure of a polyextreme GH43 glycosidase fromHalothermothrix oreniiwith α-L-arabinofuranosidase activity

(2015) Noor Hassan et al.   Acta Crystallographica Section F-Structural Biology Communications

Automatic prediction of polysaccharide utilization loci in Bacteroidetes species

(2014) Nicolas Terrapon et al.   BIOINFORMATICS

Biochemical Characterization and Crystal Structures of a Fungal Family 3 β-Glucosidase, Cel3A fromHypocrea jecorina

(2014) Saeid Karkehabadi et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

A Perspective on the Complexity of Dietary Fiber Structures and Their Potential Effect on the Gut Microbiota

(2014) Bruce R. Hamaker et al.   JOURNAL OF MOLECULAR BIOLOGY

The Devil Lies in the Details: How Variations in Polysaccharide Fine-Structure Impact the Physiology and Evolution of Gut Microbes

(2014) Eric C. Martens et al.   JOURNAL OF MOLECULAR BIOLOGY

A discrete genetic locus confers xyloglucan metabolism in select human gut Bacteroidetes

(2014) Johan Larsbrink et al.   NATURE

Phylogeny, culturing, and metagenomics of the human gut microbiota

(2014) Alan W. Walker et al.   TRENDS IN MICROBIOLOGY

Multifunctional Nutrient-Binding Proteins Adapt Human Symbiotic Bacteria for Glycan Competition in the Gut by Separately Promoting Enhanced Sensing and Catalysis

(2014) E. A. Cameron et al.   mBio

The Intestinal Microbiome in Early Life: Health and Disease

(2014) Marie-Claire Arrieta et al.   Frontiers in Immunology

Activation of a GH43 β-xylosidase by divalent metal cations: Slow binding of divalent metal and high substrate specificity

(2013) Douglas B. Jordan et al.   ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS

Complete genome of a new Firmicutes species belonging to the dominant human colonic microbiota (‘Ruminococcus bicirculans’) reveals two chromosomes and a selective capacity to utilize plant glucans

(2013) Udo Wegmann et al.   ENVIRONMENTAL MICROBIOLOGY

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Dynamic responses ofBacteroides thetaiotaomicronduring growth on glycan mixtures

(2013) Theresa E. Rogers et al.   MOLECULAR MICROBIOLOGY

Diet rapidly and reproducibly alters the human gut microbiome

(2013) Lawrence A. David et al.   NATURE

The abundance and variety of carbohydrate-active enzymes in the human gut microbiota

(2013) Abdessamad El Kaoutari et al.   NATURE REVIEWS MICROBIOLOGY

The carbohydrate-active enzymes database (CAZy) in 2013

(2013) Vincent Lombard et al.   NUCLEIC ACIDS RESEARCH

Effects of Diet on Resource Utilization by a Model Human Gut Microbiota Containing Bacteroides cellulosilyticus WH2, a Symbiont with an Extensive Glycobiome

(2013) Nathan P. McNulty et al.   PLOS BIOLOGY

NMR Spectroscopic Analysis Reveals Extensive Binding Interactions of Complex Xyloglucan Oligosaccharides with theCellvibrio japonicusGlycoside Hydrolase Family 31 α-Xylosidase

(2012) Alba Silipo et al.   CHEMISTRY-A EUROPEAN JOURNAL

Divalent metal activation of a GH43 β-xylosidase

(2012) Charles C. Lee et al.   ENZYME AND MICROBIAL TECHNOLOGY

Structural Enzymology ofCellvibrio japonicusAgd31B Protein Reveals α-Transglucosylase Activity in Glycoside Hydrolase Family 31

(2012) Johan Larsbrink et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Diversity, stability and resilience of the human gut microbiota

(2012) Catherine A. Lozupone et al.   NATURE

How glycan metabolism shapes the human gut microbiota

(2012) Nicole M. Koropatkin et al.   NATURE REVIEWS MICROBIOLOGY

The influence of diet on the gut microbiota

(2012) Karen P. Scott et al.   PHARMACOLOGICAL RESEARCH

Bacteria of the human gut microbiome catabolize red seaweed glycans with carbohydrate-active enzyme updates from extrinsic microbes

(2012) J.-H. Hehemann et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Honor Thy Gut Symbionts Redux

(2012) J. I. Gordon   SCIENCE

REFMAC5 for the refinement of macromolecular crystal structures

(2011) Garib N. Murshudov et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

Overview of theCCP4 suite and current developments

(2011) Martyn D. Winn et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

Structural and enzymatic characterization of a glycoside hydrolase family 31 α-xylosidase fromCellvibrio japonicusinvolved in xyloglucan saccharification

(2011) Johan Larsbrink et al.   BIOCHEMICAL JOURNAL

Development and Evolution of the Muscles of the Pelvic Fin

(2011) Nicholas J. Cole et al.   PLOS BIOLOGY

Recent developments in classical density modification

(2010) Kevin Cowtan   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

XDS

(2010) Wolfgang Kabsch   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

Features and development ofCoot

(2010) P. Emsley et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

Specificity of Polysaccharide Use in Intestinal Bacteroides Species Determines Diet-Induced Microbiota Alterations

(2010) Erica D. Sonnenburg et al.   CELL

Functional metagenomics to mine the human gut microbiome for dietary fiber catabolic enzymes

(2010) L. Tasse et al.   GENOME RESEARCH

Crystal Structure of an Exo-1,5-α-l-arabinofuranosidase fromStreptomyces avermitilisProvides Insights into the Mechanism of Substrate Discrimination between Exo- and Endo-type Enzymes in Glycoside Hydrolase Family 43

(2010) Zui Fujimoto et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Structural and Functional Analyses of β-Glucosidase 3B from Thermotoga neapolitana: A Thermostable Three-Domain Representative of Glycoside Hydrolase 3

(2010) Tania Pozzo et al.   JOURNAL OF MOLECULAR BIOLOGY

Effects of Dietary Fiber and Its Components on Metabolic Health

(2010) James M. Lattimer et al.   Nutrients

Dietary fibre: an agreed definition

(2009) JH Cummings et al.   LANCET

Glycosidase inhibition: assessing mimicry of the transition state

(2009) Tracey M. Gloster et al.   ORGANIC & BIOMOLECULAR CHEMISTRY

Stereoselective synthesis of novel N-(α-l-arabinofuranos-1-yl)-l-amino acids

(2009) Ming Zhao et al.   TETRAHEDRON-ASYMMETRY

Higher-throughput approaches to crystallization and crystal structure determination

(2008) Mark J. Fogg et al.   BIOCHEMICAL SOCIETY TRANSACTIONS

Mucosal Glycan Foraging Enhances Fitness and Transmission of a Saccharolytic Human Gut Bacterial Symbiont

(2008) Eric C. Martens et al.   Cell Host & Microbe

Automated macromolecular model building for X-ray crystallography using ARP/wARP version 7

(2008) Gerrit Langer et al.   Nature Protocols