Diatom acclimation to elevated CO2 via cAMP signalling and coordinated gene expression

fastcluster: Fast Hierarchical, Agglomerative Clustering Routines forRandPython

(2015) Daniel Müllner   Journal of Statistical Software

Structure and insights into the function of a Ca2+-activated Cl− channel

(2014) Veronica Kane Dickson et al.   NATURE

Localization of putative carbonic anhydrases in the marine diatom, Thalassiosira pseudonana

(2014) Mio Samukawa et al.   PHOTOSYNTHESIS RESEARCH

Acclimation conditions modify physiological response of the diatomThalassiosira pseudonanato elevated CO2concentrations in a nitrate-limited chemostat

(2013) Gwenn M. M. Hennon et al.   JOURNAL OF PHYCOLOGY

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genome-wide diel growth state transitions in the diatom Thalassiosira pseudonana

(2013) J. Ashworth et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

SLC4 family transporters in a marine diatom directly pump bicarbonate from seawater

(2013) K. Nakajima et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Whole transcriptome analysis of the silicon response of the diatom Thalassiosira pseudonana

(2012) Roshan Shrestha et al.   BMC GENOMICS

Whole-genome expression analysis reveals a role for death-related genes in stress acclimation of the diatom Thalassiosira pseudonana

(2011) Kimberlee Thamatrakoln et al.   ENVIRONMENTAL MICROBIOLOGY

Recent progresses on the genetic basis of the regulation of CO2 acquisition systems in response to CO2 concentration

(2011) Yusuke Matsuda et al.   PHOTOSYNTHESIS RESEARCH

CO2-cAMP-Responsive cis-Elements Targeted by a Transcription Factor with CREB/ATF-Like Basic Zipper Domain in the Marine Diatom Phaeodactylum tricornutum

(2011) N. Ohno et al.   PLANT PHYSIOLOGY

Transcriptomics Responses in Marine Diatom Thalassiosira pseudonana Exposed to the Polycyclic Aromatic Hydrocarbon Benzo[a]pyrene

(2011) Raquel N. Carvalho et al.   PLoS One

The Response of Thalassiosira pseudonana to Long-Term Exposure to Increased CO2 and Decreased pH

(2011) Katharine J. Crawfurd et al.   PLoS One

Efficiency of the CO2-concentrating mechanism of diatoms

(2011) B. M. Hopkinson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Accelerated Profile HMM Searches

(2011) Sean R. Eddy   PLoS Computational Biology

Carbon Concentrating Mechanisms in Eukaryotic Marine Phytoplankton

(2010) John R. Reinfelder   Annual Review of Marine Science

Transcription factor families inferred from genome sequences of photosynthetic stramenopiles

(2010) Edda Rayko et al.   NEW PHYTOLOGIST

A scaling normalization method for differential expression analysis of RNA-seq data

(2010) Mark D Robinson et al.   GENOME BIOLOGY

Jalview Version 2--a multiple sequence alignment editor and analysis workbench

(2009) A. M. Waterhouse et al.   BIOINFORMATICS

Bestrophin Cl− channels are highly permeable to HCO3−

(2008) Zhiqiang Qu et al.   AMERICAN JOURNAL OF PHYSIOLOGY-CELL PHYSIOLOGY

Structure and metal exchange in the cadmium carbonic anhydrase of marine diatoms

(2008) Yan Xu et al.   NATURE

Whole-genome expression profiling of the marine diatom Thalassiosira pseudonana identifies genes involved in silicon bioprocesses

(2008) T. Mock et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Evidence for Upwelling of Corrosive "Acidified" Water onto the Continental Shelf

(2008) R. A. Feely et al.   SCIENCE