Rice Improvement Through Genome-Based Functional Analysis and Molecular Breeding in India

Isolation and characterization of altered root growth behavior and salinity tolerant mutants in rice

(2016) Ashokkumar K et al.   AFRICAN JOURNAL OF BIOTECHNOLOGY

Molecular phylogenetic study and expression analysis of ATP-binding cassette transporter gene family in Oryza sativa in response to salt stress

(2015) Jayita Saha et al.   COMPUTATIONAL BIOLOGY AND CHEMISTRY

Genome-wide association mapping of salinity tolerance in rice (Oryza sativa)

(2015) V. Kumar et al.   DNA RESEARCH

Synergistic regulatory networks mediated by microRNAs and transcription factors under drought, heat and salt stresses in Oryza Sativa spp.

(2015) Deepti Nigam et al.   GENE

Functions for rice RFL in vegetative axillary meristem specification and outgrowth

(2015) Gauravi M. Deshpande et al.   JOURNAL OF EXPERIMENTAL BOTANY

A nuclear-localized histone-gene binding protein from rice (OsHBP1b) functions in salinity and drought stress tolerance by maintaining chlorophyll content and improving the antioxidant machinery

(2015) Nita Lakra et al.   JOURNAL OF PLANT PHYSIOLOGY

Constitutive expression and silencing of a novel seed specific calcium dependent protein kinase gene in rice reveals its role in grain filling

(2015) P. Manimaran et al.   JOURNAL OF PLANT PHYSIOLOGY

Differential expression of microRNAs by arsenate and arsenite stress in natural accessions of rice

(2015) Deepika Sharma et al.   Metallomics

miRNA plays a role in the antagonistic effect of selenium on arsenic stress in rice seedlings

(2015) Chandana Pandey et al.   Metallomics

Identification of a diverse mini-core panel of Indian rice germplasm based on genotyping using microsatellite markers

(2015) Kapil K. Tiwari et al.   PLANT BREEDING

Natural allelic diversity in OsDREB1F gene in the Indian wild rice germplasm led to ascertain its association with drought tolerance

(2015) Bikram Pratap Singh et al.   PLANT CELL REPORTS

Constitutive over-expression of rice chymotrypsin protease inhibitor gene OCPI2 results in enhanced growth, salinity and osmotic stress tolerance of the transgenic Arabidopsis plants

(2015) Lalit Dev Tiwari et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Unique miRNome during anthesis in drought-tolerant indica rice var. Nagina 22

(2015) Shivani Kansal et al.   PLANTA

Transgenic expression of an unedited mitochondrial orfB gene product from wild abortive (WA) cytoplasm of rice (Oryza sativa L.) generates male sterility in fertile rice lines

(2015) Anirban Chakraborty et al.   PLANTA

Genome-Wide Distribution, Organisation and Functional Characterization of Disease Resistance and Defence Response Genes across Rice Species

(2015) Sangeeta Singh et al.   PLoS One

Whole genome sequencing and analysis of Swarna, a widely cultivated indica rice variety with low glycemic index

(2015) Pasupathi Rathinasabapathi et al.   Scientific Reports

Single-copy gene based 50 K SNP chip for genetic studies and molecular breeding in rice

(2015) Nisha Singh et al.   Scientific Reports

OsTCP19 influences developmental and abiotic stress signaling by modulating ABI4-mediated pathways

(2015) Pradipto Mukhopadhyay et al.   Scientific Reports

Physiological, anatomical and transcriptional alterations in a rice mutant leading to enhanced water stress tolerance

(2015) John Milton Lima et al.   AoB Plants

Extensive sequence variation in rice blast resistance gene Pi54 makes it broad spectrum in nature

(2015) Shallu Thakur et al.   Frontiers in Plant Science

Cloning and functional validation of early inducible Magnaporthe oryzae responsive CYP76M7 promoter from rice

(2015) Joshitha Vijayan et al.   Frontiers in Plant Science

Genetic diversity analysis in aromatic rice genotypes using microsatellite based simple sequence repeats (SSR) marker

(2015) Meti Netravati et al.   AFRICAN JOURNAL OF BIOTECHNOLOGY

Nucleotide Diversity Analysis of Three Major Bacterial Blight Resistance Genes in Rice

(2015) Waikhom Bimolata et al.   PLoS One

ABA Inducible Rice Protein Phosphatase 2C Confers ABA Insensitivity and Abiotic Stress Tolerance in Arabidopsis

(2015) Amarjeet Singh et al.   PLoS One

Expanding frontiers in plant transcriptomics in aid of functional genomics and molecular breeding

(2014) Pinky Agarwal et al.   Biotechnology Journal

Comprehensive structural, interaction and expression analysis of CBL and CIPK complement during abiotic stresses and development in rice

(2014) Poonam Kanwar et al.   CELL CALCIUM

Whole genome transcriptome analysis of rice seedling reveals alterations in Ca2+ ion signaling and homeostasis in response to Ca2+ deficiency

(2014) Alka Shankar et al.   CELL CALCIUM

Identification of candidate genes for rice grain aroma by combining QTL mapping and transcriptome profiling approaches

(2014) V. Pachauri et al.   CEREAL RESEARCH COMMUNICATIONS

Comprehensive Expression Analysis of Rice Armadillo Gene Family During Abiotic Stress and Development

(2014) M. Sharma et al.   DNA RESEARCH

Heavy metals induce oxidative stress and genome-wide modulation in transcriptome of rice root

(2014) Sonali Dubey et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Expression of a cyclophilin OsCyp2-P isolated from a salt-tolerant landrace of rice in tobacco alleviates stress via ion homeostasis and limiting ROS accumulation

(2014) Sumita Kumari et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Nucleotide diversity of Pita, a major blast resistance gene and identification of its minimal promoter

(2014) G. Ramkumar et al.   GENE

Post-translational regulation of rice MADS29 function: homodimerization or binary interactions with other seed-expressed MADS proteins modulate its translocation into the nucleus

(2014) Saraswati Nayar et al.   JOURNAL OF EXPERIMENTAL BOTANY

A substitution mutation in OsCCD7 cosegregates with dwarf and increased tillering phenotype in rice

(2014) KRISHNANAND P. KULKARNI et al.   JOURNAL OF GENETICS

The genome sequence of African rice (Oryza glaberrima) and evidence for independent domestication

(2014) Muhua Wang et al.   NATURE GENETICS

SNP-Seek database of SNPs derived from 3000 rice genomes

(2014) Nickolai Alexandrov et al.   NUCLEIC ACIDS RESEARCH

Expression of abiotic stress inducible ETHE1-like protein from rice is higher in roots and is regulated by calcium

(2014) Charanpreet Kaur et al.   PHYSIOLOGIA PLANTARUM

OsiSAP1 overexpression improves water-deficit stress tolerance in transgenic rice by affecting expression of endogenous stress-related genes

(2014) Prasant K. Dansana et al.   PLANT CELL REPORTS

Phenotypic expression of blast resistance gene Pi54 is not affected by its chromosomal position

(2014) K. Arora et al.   PLANT CELL REPORTS

A glutathione responsive rice glyoxalase II, OsGLYII-2, functions in salinity adaptation by maintaining better photosynthesis efficiency and anti-oxidant pool

(2014) Ajit Ghosh et al.   PLANT JOURNAL

Salinity and drought tolerant OsACA6 enhances cold tolerance in transgenic tobacco by interacting with stress-inducible proteins

(2014) Kazi Md. Kamrul Huda et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Rice SAPs are responsive to multiple biotic stresses and overexpression of OsSAP1, an A20/AN1 zinc-finger protein, enhances the basal resistance against pathogen infection in tobacco

(2014) Himani Tyagi et al.   PLANT SCIENCE

Over-Expression of a Rice Tau Class Glutathione S-Transferase Gene Improves Tolerance to Salinity and Oxidative Stresses in Arabidopsis

(2014) Raghvendra Sharma et al.   PLoS One

The Blast Resistance Gene Pi54of Cloned from Oryza officinalis Interacts with Avr-Pi54 through Its Novel Non-LRR Domains

(2014) Navadagi B. Devanna et al.   PLoS One

Analysis of Genetic Diversity and Population Structure of Rice Germplasm from North-Eastern Region of India and Development of a Core Germplasm Set

(2014) Debjani Roy Choudhury et al.   PLoS One

Phenotypic and molecular characterization of native Azospirillum strains from rice fields to improve crop productivity

(2014) Ranjan K Sahoo et al.   PROTOPLASMA

A computational model for non-conserved mature miRNAs from the rice genome

(2014) S.P. Kumar et al.   SAR AND QSAR IN ENVIRONMENTAL RESEARCH

OsSUV3 transgenic rice maintains higher endogenous levels of plant hormones that mitigates adverse effects of salinity and sustains crop productivity

(2014) Ranjan Kumar Sahoo et al.   Rice

Expression of OsMATE1 and OsMATE2 alters development, stress responses and pathogen susceptibility in Arabidopsis

(2014) Manish Tiwari et al.   Scientific Reports

Genetic diversity analysis of colored and white rice genotypes using Microsatellite (SSR) and Insertion-Deletion (INDEL) markers

(2014) Siddhi Patel et al.   Emirates Journal of Food and Agriculture

The 3,000 rice genomes project: new opportunities and challenges for future rice research

(2014) Jia-Yang Li et al.   GigaScience

Genetic diversity and population structure of rice landraces from Eastern and North Eastern States of India

(2013) Basabdatta Das et al.   BMC GENETICS

Mapping quantitative trait loci (QTL) for grain size in rice using a RIL population from Basmati × indica cross showing high segregation distortion

(2013) P. S. Shanmugavadivel et al.   EUPHYTICA

Mining of rice blast resistance gene Pi54 shows effect of single nucleotide polymorphisms on phenotypic expression of the alleles

(2013) A. Kumari et al.   EUROPEAN JOURNAL OF PLANT PATHOLOGY

Evolution of variety-specific regulatory schema for expression of osa-miR408 inindicarice varieties under drought stress

(2013) Roseeta D. Mutum et al.   FEBS Journal

Identification of abiotic stress miRNA transcription factor binding motifs (TFBMs) in rice

(2013) S.J.S. Rama Devi et al.   GENE

Identification and characterization of salt responsive miRNA-SSR markers in rice (Oryza sativa)

(2013) Tapan Kumar Mondal et al.   GENE

Phylogenetic analysis reveals conservation and diversification of micro RNA166 genes among diverse plant species

(2013) Suvakanta Barik et al.   GENOMICS

Down-regulation of OsSAG12-1 results in enhanced senescence and pathogen-induced cell death in transgenic rice plants

(2013) Subaran Singh et al.   JOURNAL OF BIOSCIENCES

Identification of tissue-preferential expression patterns of rice miRNAs

(2013) Deepti Mittal et al.   JOURNAL OF CELLULAR BIOCHEMISTRY

Functional delineation of rice MADS29 reveals its role in embryo and endosperm development by affecting hormone homeostasis

(2013) Saraswati Nayar et al.   JOURNAL OF EXPERIMENTAL BOTANY

Expression of a rice Lambda class of glutathione S-transferase, OsGSTL2, in Arabidopsis provides tolerance to heavy metal and other abiotic stresses

(2013) Smita Kumar et al.   JOURNAL OF HAZARDOUS MATERIALS

Sequence and expression analyses of KIX domain proteins suggest their importance in seed development and determination of seed size in rice, and genome stability in Arabidopsis

(2013) Jitendra Kumar Thakur et al.   MOLECULAR GENETICS AND GENOMICS

Riceoxalate oxidasegene driven by green tissue-specific promoter increases tolerance to sheath blight pathogen (Rhizoctonia solani) in transgenic rice

(2013) Kutubuddin A. Molla et al.   MOLECULAR PLANT PATHOLOGY

Manually curated database of rice proteins

(2013) Pratibha Gour et al.   NUCLEIC ACIDS RESEARCH

STIFDB2: An Updated Version of Plant Stress-Responsive TranscrIption Factor DataBase with Additional Stress Signals, Stress-Responsive Transcription Factor Binding Sites and Stress-Responsive Genes in Arabidopsis and Rice

(2013) Mahantesha Naika et al.   PLANT AND CELL PHYSIOLOGY

Genomewide discovery of DNA polymorphisms in rice cultivars with contrasting drought and salinity stress response and their functional relevance

(2013) Mukesh Jain et al.   PLANT BIOTECHNOLOGY JOURNAL

Marker-assisted introgression of bacterial blight and blast resistance into IR 58025B, an elite maintainer line of rice

(2013) Yadla Hari et al.   PLANT BREEDING

OsACA6, a P-type IIB Ca2+ATPase promotes salinity and drought stress tolerance in tobacco by ROS scavenging and enhancing the expression of stress-responsive genes

(2013) Kazi M. K. Huda et al.   PLANT JOURNAL

Coexpression network analysis associated with call of rice seedlings for encountering heat stress

(2013) Neelam K. Sarkar et al.   PLANT MOLECULAR BIOLOGY

Genome-wide analysis of plant-type II Ca2+ATPases gene family from rice and Arabidopsis: Potential role in abiotic stresses

(2013) Kazi Md. Kamrul Huda et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Modified expression of an auxin-responsive rice CC-type glutaredoxin gene affects multiple abiotic stress responses

(2013) Raghvendra Sharma et al.   PLANTA

Comprehensive Genomic Analysis and Expression Profiling of Phospholipase C Gene Family during Abiotic Stresses and Development in Rice

(2013) Amarjeet Singh et al.   PLoS One

Development of Low Phytate Rice by RNAi Mediated Seed-Specific Silencing of Inositol 1,3,4,5,6-Pentakisphosphate 2-Kinase Gene (IPK1)

(2013) Nusrat Ali et al.   PLoS One

Gene Expression Analysis of Rice Seedling under Potassium Deprivation Reveals Major Changes in Metabolism and Signaling Components

(2013) Alka Shankar et al.   PLoS One

Comparison of SSR and SNP Markers in Estimation of Genetic Diversity and Population Structure of Indian Rice Varieties

(2013) Nivedita Singh et al.   PLoS One

RiceSRTFDB: A database of rice transcription factors containing comprehensive expression, cis-regulatory element and mutant information to facilitate gene function analysis

(2013) Pushp Priya et al.   Database-The Journal of Biological Databases and Curation

Hydroponic experiment for identification of tolerance traits developed by rice Nagina 22 mutants to low-phosphorus in field condition

(2013) Madhusmita Panigrahy et al.   Archives of Agronomy and Soil Science

Genome-wide classification and expression analysis of MYB transcription factor families in rice and Arabidopsis

(2012) Amit Katiyar et al.   BMC GENOMICS

SNPs in stress-responsive rice genes: validation, genotyping, functional relevance and population structure

(2012) Swarup K Parida et al.   BMC GENOMICS

Xanthomonas oryzae pv oryzae triggers immediate transcriptomic modulations in rice

(2012) Rumdeep K Grewal et al.   BMC GENOMICS

QTL analysis of novel genomic regions associated with yield and yield related traits in new plant type based recombinant inbred lines of rice (Oryza sativa L.)

(2012) Balram Marathi et al.   BMC PLANT BIOLOGY

Clustered metallothionein genes are co-regulated in rice and ectopic expression of OsMT1e-P confers multiple abiotic stress tolerance in tobacco via ROS scavenging

(2012) Gautam Kumar et al.   BMC PLANT BIOLOGY

microRNAs targeting DEAD-box helicases are involved in salinity stress response in rice (Oryza sativa L.)

(2012) Anca Macovei et al.   BMC PLANT BIOLOGY

Functional analysis of Hsp70 superfamily proteins of rice (Oryza sativa)

(2012) Neelam K. Sarkar et al.   CELL STRESS & CHAPERONES

Haplotype structure in grain weight gene GW2 and its association with grain characteristics in rice

(2012) N. Dixit et al.   EUPHYTICA

Mapping and marker-assisted breeding of a gene allelic to the major Asian rice gall midge resistance gene Gm8

(2012) V. S. A. K. Sama et al.   EUPHYTICA

Genome-wide identification of rice class I metallothionein gene: tissue expression patterns and induction in response to heavy metal stress

(2012) Neelam Gautam et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

LOX genes in blast fungus (Magnaporthe grisea) resistance in rice

(2012) Soma S. Marla et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

A novel blast resistance gene, Pi54rh cloned from wild species of rice, Oryza rhizomatis confers broad spectrum resistance to Magnaporthe oryzae

(2012) Alok Das et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Expression dynamics of metabolic and regulatory components across stages of panicle and seed development in indica rice

(2012) Rita Sharma et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Mapping QTLs and candidate genes for iron and zinc concentrations in unpolished rice of Madhukar×Swarna RILs

(2012) K. Anuradha et al.   GENE

Identification of mirtrons in rice using MirtronPred: A tool for predicting plant mirtrons

(2012) Pankaj Kumar Joshi et al.   GENOMICS

Mapping of QTLs Controlling Na+, K+ and CI− Ion Concentrations in Salt Tolerant Indica Rice Variety CSR27

(2012) M. H. M. Ammar et al.   JOURNAL OF PLANT BIOCHEMISTRY AND BIOTECHNOLOGY

Validation of gene based marker-QTL association for grain dimension traits in rice

(2012) Deepti Anand et al.   JOURNAL OF PLANT BIOCHEMISTRY AND BIOTECHNOLOGY

Overexpression of Rice CBS Domain Containing Protein Improves Salinity, Oxidative, and Heavy Metal Tolerance in Transgenic Tobacco

(2012) Anil K. Singh et al.   MOLECULAR BIOTECHNOLOGY

Improvement of two traditional Basmati rice varieties for bacterial blight resistance and plant stature through morphological and marker-assisted selection

(2012) Manish K. Pandey et al.   MOLECULAR BREEDING

Genome-wide DNA polymorphisms in eliteindicarice inbreds discovered by whole-genome sequencing

(2012) Gopala K. Subbaiyan et al.   PLANT BIOTECHNOLOGY JOURNAL

Genome-wide analysis of lectin receptor-like kinase family from Arabidopsis and rice

(2012) Neha Vaid et al.   PLANT MOLECULAR BIOLOGY

Gene expression analysis in response to low and high temperature and oxidative stresses in rice: Combination of stresses evokes different transcriptional changes as against stresses applied individually

(2012) Dheeraj Mittal et al.   PLANT SCIENCE

Rice Phospholipase A Superfamily: Organization, Phylogenetic and Expression Analysis during Abiotic Stresses and Development

(2012) Amarjeet Singh et al.   PLoS One

Genome-Wide Transcriptional Profiles during Temperature and Oxidative Stress Reveal Coordinated Expression Patterns and Overlapping Regulons in Rice

(2012) Dheeraj Mittal et al.   PLoS One

Identification and Comparative Analysis of MicroRNAs Associated with Low-N Tolerance in Rice Genotypes

(2012) Lata Nischal et al.   PLoS One

Spatial and temporal activity of upstream regulatory regions of rice anther-specific genes in transgenic rice and Arabidopsis

(2012) Reema Khurana et al.   TRANSGENIC RESEARCH

Transcription factors regulating the progression of monocot and dicot seed development

(2011) Pinky Agarwal et al.   BIOESSAYS

Expression of OsDREB2A transcription factor confers enhanced dehydration and salt stress tolerance in rice (Oryza sativa L.)

(2011) Garladinne Mallikarjuna et al.   BIOTECHNOLOGY LETTERS

qDTY1.1, a major QTL for rice grain yield under reproductive-stage drought stress with a consistent effect in multiple elite genetic backgrounds

(2011) Prashant Vikram et al.   BMC GENETICS

Employing machine learning for reliable miRNA target identification in plants

(2011) Ashwani Jha et al.   BMC GENOMICS

Analysis of anther transcriptomes to identify genes contributing to meiosis and male gametophyte development in rice

(2011) Priyanka Deveshwar et al.   BMC PLANT BIOLOGY

OsHsfA2c and OsHsfB4b are involved in the transcriptional regulation of cytoplasmic OsClpB (Hsp100) gene in rice (Oryza sativa L.)

(2011) Amanjot Singh et al.   CELL STRESS & CHAPERONES

Differential expression and alternative splicing of rice sulphate transporter family members regulate sulphur status during plant growth, development and stress conditions

(2011) Smita Kumar et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Genome-wide analysis of rice and Arabidopsis identifies two glyoxalase genes that are highly expressed in abiotic stresses

(2011) Ananda Mustafiz et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

The single functional blast resistance gene Pi54 activates a complex defence mechanism in rice

(2011) Santosh Kumar Gupta et al.   JOURNAL OF EXPERIMENTAL BOTANY

Analysis of molecular diversity and fingerprinting of commercially grown Indian rice hybrids

(2011) Deepti Anand et al.   JOURNAL OF PLANT BIOCHEMISTRY AND BIOTECHNOLOGY

Molecular mapping of grain physico-chemical and cooking quality traits using recombinant inbred lines in rice (Oryza sativa L.)

(2011) S. Guleria et al.   JOURNAL OF PLANT BIOCHEMISTRY AND BIOTECHNOLOGY

Fine Mapping QTL for Drought Resistance Traits in Rice (Oryza sativa L.) Using Bulk Segregant Analysis

(2011) Arvindkumar Shivaji Salunkhe et al.   MOLECULAR BIOTECHNOLOGY

Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress

(2011) Harsh Chauhan et al.   MOLECULAR GENETICS AND GENOMICS

Rice A20/AN1 zinc-finger containing stress-associated proteins (SAP1/11) and a receptor-like cytoplasmic kinase (OsRLCK253) interact via A20 zinc-finger and confer abiotic stress tolerance in transgenic Arabidopsis plants

(2011) Jitender Giri et al.   NEW PHYTOLOGIST

Identification and Fine-Mapping of Xa33, a Novel Gene for Resistance to Xanthomonas oryzae pv. oryzae

(2011) P. Natraj Kumar et al.   PHYTOPATHOLOGY

Marker-assisted improvement of a stable restorer line, KMR-3R and its derived hybrid KRH2 for bacterial blight resistance and grain quality

(2011) Yadla Hari et al.   PLANT BREEDING

Native polyubiquitin promoter of rice provides increased constitutive expression in stable transgenic rice plants

(2011) Jagannath Bhattacharyya et al.   PLANT CELL REPORTS

Inducibility of three salinity/abscisic acid-regulated promoters in transgenic rice with gusA reporter gene

(2011) Moumita Ganguly et al.   PLANT CELL REPORTS

The Mediator Complex in Plants: Structure, Phylogeny, and Expression Profiling of Representative Genes in a Dicot (Arabidopsis) and a Monocot (Rice) during Reproduction and Abiotic Stress

(2011) S. Mathur et al.   PLANT PHYSIOLOGY

Analysis of transcriptional and upstream regulatory sequence activity of two environmental stress-inducible genes, NBS-Str1 and BLEC-Str8, of rice

(2011) Swatismita Ray et al.   TRANSGENIC RESEARCH

QlicRice: a web interface for abiotic stress responsive QTL and loci interaction channels in rice

(2011) Shuchi Smita et al.   Database-The Journal of Biological Databases and Curation

RNAi mediated silencing of a wall associated kinase, OsiWAK1 in Oryza sativa results in impaired root development and sterility due to anther indehiscence

(2011) Vydehi Kanneganti et al.   PHYSIOLOGY AND MOLECULAR BIOLOGY OF PLANTS

Genome-Wide Comparative in silico Analysis of Calcium Transporters of Rice and Sorghum

(2011) Anshita Goel et al.   GENOMICS PROTEOMICS & BIOINFORMATICS

Transgenically expressed rice germin-like protein1 in tobacco causes hyper-accumulation of H2O2 and reinforcement of the cell wall components

(2010) Joydeep Banerjee et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Functional role of rice germin-like protein1 in regulation of plant height and disease resistance

(2010) Joydeep Banerjee et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Transcriptomic and metabolomic shifts in rice roots in response to Cr (VI) stress

(2010) Sonali Dubey et al.   BMC GENOMICS

Protein phosphatase complement in rice: genome-wide identification and transcriptional analysis under abiotic stress conditions and reproductive development

(2010) Amarjeet Singh et al.   BMC GENOMICS

Genome-Wide Survey and Expression Analysis Suggest Diverse Roles of Glutaredoxin Gene Family Members During Development and Response to Various Stimuli in Rice

(2010) R. Garg et al.   DNA RESEARCH

In Silico Analysis Reveals 75 Members of Mitogen-Activated Protein Kinase Kinase Kinase Gene Family in Rice

(2010) K. P. Rao et al.   DNA RESEARCH

Identification of candidate genes for grain number in rice (Oryza sativa L.)

(2010) Rupesh Deshmukh et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Modulation of transcription factor and metabolic pathway genes in response to water-deficit stress in rice

(2010) Swatismita Ray et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Transcriptional profiling and in silico analysis of Dof transcription factor gene family for understanding their regulation during seed development of rice Oryza sativa L.

(2010) Vikram Singh Gaur et al.   MOLECULAR BIOLOGY REPORTS

Pollen-Specific Expression of Oryza sativa Indica Pollen Allergen Gene (OSIPA) Promoter in Rice and Arabidopsis Transgenic Systems

(2010) L. Swapna et al.   MOLECULAR BIOTECHNOLOGY

Genic markers for wild abortive (WA) cytoplasm based male sterility and its fertility restoration in rice

(2010) Umakanta Ngangkham et al.   MOLECULAR BREEDING

SNP haplotypes of the BADH1 gene and their association with aroma in rice (Oryza sativa L.)

(2010) Anuradha Singh et al.   MOLECULAR BREEDING

Marker-assisted improvement of bacterial blight resistance in parental lines of Pusa RH10, a superfine grain aromatic rice hybrid

(2010) S. H. Basavaraj et al.   MOLECULAR BREEDING

Combining QTL mapping and transcriptome profiling of bulked RILs for identification of functional polymorphism for salt tolerance genes in rice (Oryza sativa L.)

(2010) Awadhesh Pandit et al.   MOLECULAR GENETICS AND GENOMICS

Comparative analysis of drought-responsive transcriptome in Indica rice genotypes with contrasting drought tolerance

(2010) Sangram K. Lenka et al.   PLANT BIOTECHNOLOGY JOURNAL

Genome-wide analysis of helicase gene family from rice and Arabidopsis: a comparison with yeast and human

(2010) Pavan Umate et al.   PLANT MOLECULAR BIOLOGY

Enhanced salt tolerance of transgenic tobacco plants by co-expression of PcINO1 and McIMT1 is accompanied by increased level of myo-inositol and methylated inositol

(2010) Barunava Patra et al.   PROTOPLASMA

Introduction of bacterial blight resistance into Triguna, a high yielding, mid-early duration rice variety

(2009) Raman M. Sundaram et al.   Biotechnology Journal

Genome wide expression analysis of CBS domain containing proteins in Arabidopsis thaliana (L.) Heynh and Oryza sativa L. reveals their developmental and stress regulation

(2009) Hemant R Kushwaha et al.   BMC GENOMICS

Rice sHsp genes: genomic organization and expression profiling under stress and development

(2009) Neelam K Sarkar et al.   BMC GENOMICS

Genic non-coding microsatellites in the rice genome: characterization, marker design and use in assessing genetic and evolutionary relationships among domesticated groups

(2009) Swarup KUMAR Parida et al.   BMC GENOMICS

A new rice gall midge resistance gene in the breeding line CR57-MR1523, mapping with flanking markers and development of NILs

(2009) K. Himabindu et al.   EUPHYTICA

Identification of major quantitative trait loci qSBR11-1 for sheath blight resistance in rice

(2009) V. Channamallikarjuna et al.   MOLECULAR BREEDING

Highly variable SSR markers suitable for rice genotyping using agarose gels

(2009) Harvinder Singh et al.   MOLECULAR BREEDING

Carotenoid biosynthesis genes in rice: structural analysis, genome-wide expression profiling and phylogenetic analysis

(2009) Neetu Chaudhary et al.   MOLECULAR GENETICS AND GENOMICS

Cloning and validation of novel miRNA from basmati rice indicates cross talk between abiotic and biotic stresses

(2009) Neeti Sanan-Mishra et al.   MOLECULAR GENETICS AND GENOMICS

Overexpression of Rice (Oryza sativaL.)OsCDR1Leads to Constitutive Activation of Defense Responses in Rice andArabidopsis

(2009) Bishun Deo Prasad et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Differential transcriptional expression following thidiazuron-induced callus differentiation developmental shifts in rice

(2009) D. Chakrabarty et al.   PLANT BIOLOGY

Heat shock factor gene family in rice: Genomic organization and transcript expression profiling in response to high temperature, low temperature and oxidative stresses

(2009) Dheeraj Mittal et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Characterization of a pollen-preferential gene OSIAGP from rice (Oryza sativa L. subspecies indica) coding for an arabinogalactan protein homologue, and analysis of its promoter activity during pollen development and pollen tube growth

(2009) Saurabh Anand et al.   TRANSGENIC RESEARCH

Genome-wide identification, organization and phylogenetic analysis of Dicer-like, Argonaute and RNA-dependent RNA Polymerase gene families and their expression analysis during reproductive development and stress in rice

(2008) Meenu Kapoor et al.   BMC GENOMICS

Comparative transcriptome analysis of arsenate and arsenite stresses in rice seedlings

(2008) Debasis Chakrabarty et al.   CHEMOSPHERE

Genome-wide identification, classification, evolutionary expansion and expression analyses of homeobox genes in rice

(2008) Mukesh Jain et al.   FEBS Journal

Transcriptome map for seedling stage specific salinity stress response indicates a specific set of genes as candidate for saline tolerance in Oryza sativa L.

(2008) Sumita Kumari et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Chymotrypsin protease inhibitor gene family in rice: Genomic organization and evidence for the presence of a bidirectional promoter shared between two chymotrypsin protease inhibitor genes

(2008) Amanjot Singh et al.   GENE

A novel bacterial blight resistance gene from Oryza nivara mapped to 38 kb region on chromosome 4L and transferred to Oryza sativa L.

(2008) KULJIT K. CHEEMA et al.   Genetics Research

The Receptor-Like Cytoplasmic Kinase (OsRLCK) Gene Family in Rice: Organization, Phylogenetic Relationship, and Expression during Development and Stress

(2008) Shubha Vij et al.   Molecular Plant

Integrating marker assisted background analysis with foreground selection for identification of superior bacterial blight resistant recombinants in Basmati rice

(2008) S. Gopalakrishnan et al.   PLANT BREEDING

Rice DREB1B promoter shows distinct stress-specific responses, and the overexpression of cDNA in tobacco confers improved abiotic and biotic stress tolerance

(2008) Linga Reddy Gutha et al.   PLANT MOLECULAR BIOLOGY

Overexpression of OsiSAP8, a member of stress associated protein (SAP) gene family of rice confers tolerance to salt, drought and cold stress in transgenic tobacco and rice

(2008) Vydehi Kanneganti et al.   PLANT MOLECULAR BIOLOGY

Distinct regulatory role for RFL, the rice LFY homolog, in determining flowering time and plant architecture

(2008) N. N. Rao et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA