Rapid annotation ofnifHgene sequences using classification and regression trees facilitates environmental functional gene analysis

ARBitrator: a software pipeline for on-demand retrieval of auto-curated nifH sequences from GenBank

(2014) Philip Heller et al.   BIOINFORMATICS

nifHpyrosequencing reveals the potential for location-specific soil chemistry to influence N2-fixing community dynamics

(2014) Mónica M. Collavino et al.   ENVIRONMENTAL MICROBIOLOGY

Cultivation and isolation of N2-fixing bacteria from suboxic waters in the Baltic Sea

(2014) Mikkel Bentzon-Tilia et al.   FEMS MICROBIOLOGY ECOLOGY

A comprehensive aligned nifH gene database: a multipurpose tool for studies of nitrogen-fixing bacteria

(2014) John Christian Gaby et al.   Database-The Journal of Biological Databases and Curation

Classification of pmoA amplicon pyrosequences using BLAST and the lowest common ancestor method in MEGAN

(2014) Marc G. Dumont et al.   Frontiers in Microbiology

Nitrogen fixation in distinct microbial niches within a chemoautotrophy-driven cave ecosystem

(2013) Mahesh S Desai et al.   ISME Journal

Aphotic N2 Fixation in the Eastern Tropical South Pacific Ocean

(2013) Sophie Bonnet et al.   PLoS One

Dinitrogen fixation in aphotic oxygenated marine environments

(2013) Eyal Rahav et al.   Frontiers in Microbiology

Corals Form Characteristic Associations with Symbiotic Nitrogen-Fixing Bacteria

(2012) Kimberley A. Lema et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

A comparative evaluation of sequence classification programs

(2012) Adam L Bazinet et al.   BMC BIOINFORMATICS

Phylogenetic Diversity of Nitrogen Fixation Genes in the Intestinal Tract of Reticulitermes chinensis Snyder

(2012) Xin Du et al.   CURRENT MICROBIOLOGY

Diversity, distribution, and expression of diazotrophnifHgenes in oxygen-deficient waters of the Arabian Sea

(2012) Amal Jayakumar et al.   FEMS MICROBIOLOGY ECOLOGY

A Comprehensive Evaluation of PCR Primers to Amplify the nifH Gene of Nitrogenase

(2012) John Christian Gaby et al.   PLoS One

Phylogenetic diversity and spatio-temporal ­distribution of nitrogenase genes (nifH) in the northern South China Sea

(2011) L Kong et al.   AQUATIC MICROBIAL ECOLOGY

Nitrogen fixation within the water column associated with two hypoxic basins in the Southern California Bight

(2011) MR Hamersley et al.   AQUATIC MICROBIAL ECOLOGY

Is dinitrogen fixation significant in the Levantine Basin, East Mediterranean Sea?

(2011) Tali Yogev et al.   ENVIRONMENTAL MICROBIOLOGY

A global census of nitrogenase diversity

(2011) John Christian Gaby et al.   ENVIRONMENTAL MICROBIOLOGY

Seasonal variations in the diversity and abundance of diazotrophic communities across soils

(2011) Michele C. Pereira e Silva et al.   FEMS MICROBIOLOGY ECOLOGY

Heterotrophic organisms dominate nitrogen fixation in the South Pacific Gyre

(2011) Hannah Halm et al.   ISME Journal

Bacteroidales ectosymbionts of gut flagellates shape the nitrogen-fixing community in dry-wood termites

(2011) Mahesh S Desai et al.   ISME Journal

Nitrogen fixation and nitrogenase (nifH) expression in tropical waters of the eastern North Atlantic

(2011) Kendra A Turk et al.   ISME Journal

Environmental Constraints Underpin the Distribution and Phylogenetic Diversity of nifH in the Yellowstone Geothermal Complex

(2011) Trinity L. Hamilton et al.   MICROBIAL ECOLOGY

Nitrogen Fixation in Denitrified Marine Waters

(2011) Camila Fernandez et al.   PLoS One

Nitrogenase Gene Amplicons from Global Marine Surface Waters Are Dominated by Genes of Non-Cyanobacteria

(2011) Hanna Farnelid et al.   PLoS One

Nitrogen fixation by marine cyanobacteria

(2011) Jonathan P. Zehr   TRENDS IN MICROBIOLOGY

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

pplacer: linear time maximum-likelihood and Bayesian phylogenetic placement of sequences onto a fixed reference tree

(2010) Frederick A Matsen et al.   BMC BIOINFORMATICS

Distribution of diazotrophic microorganisms and nifH gene expression in the Mekong River plume during intermonsoon

(2010) D Bombar et al.   MARINE ECOLOGY PROGRESS SERIES

Microbial community shifts influence patterns in tropical forest nitrogen fixation

(2010) Sasha C. Reed et al.   OECOLOGIA

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Application of CART in ecological landscape mapping: Two case studies

(2009) Roland Pesch et al.   ECOLOGICAL INDICATORS

FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix

(2009) M. N. Price et al.   MOLECULAR BIOLOGY AND EVOLUTION

The microbial ocean from genomes to biomes

(2009) Edward F. DeLong   NATURE

Identity and dynamics of putative N2-fixing picoplankton in the Baltic Sea proper suggest complex patterns of regulation

(2009) Hanna Farnelid et al.   Environmental Microbiology Reports

Characterization of Diazotrophs Containing Mo-Independent Nitrogenases, Isolated from Diverse Natural Environments

(2008) D. A. Betancourt et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Diversity and expression of nitrogen fixation genes in bacterial symbionts of marine sponges

(2008) Naglaa M. Mohamed et al.   ENVIRONMENTAL MICROBIOLOGY

Nitrogen fixation in an anticyclonic eddy in the oligotrophic North Pacific Ocean

(2008) Allison A Fong et al.   ISME Journal

Diversity and abundance of diazotrophic microorganisms in the South China Sea during intermonsoon

(2008) Pia H Moisander et al.   ISME Journal

Evidence for the functional significance of diazotroph community structure in soil

(2008) Shi-Fang Hsu et al.   ISME Journal

Nitrogen fixation by phyllosphere bacteria associated with higher plants and their colonizing epiphytes of a tropical lowland rainforest of Costa Rica

(2008) Michael Fürnkranz et al.   ISME Journal

Testing of null hypotheses in exploratory community analyses: similarity profiles and biota-environment linkage

(2008) K. Robert Clarke et al.   JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY

Analysis of a diverse assemblage of diazotrophic bacteria from Spartina alterniflora using DGGE and clone library screening

(2008) Charles R. Lovell et al.   JOURNAL OF MICROBIOLOGICAL METHODS

High Diversity of Diazotrophs in the Forefield of a Receding Alpine Glacier

(2008) Laurence Duc et al.   MICROBIAL ECOLOGY

The Ribosomal Database Project: improved alignments and new tools for rRNA analysis

(2008) J. R. Cole et al.   NUCLEIC ACIDS RESEARCH