Elucidating the triplicated ancestral genome structure of radish based on chromosome-level comparison with the Brassica genomes

Complete mitochondrial genome sequence of black mustard (Brassica nigra; BB) and comparison with Brassica oleracea (CC) and Brassica carinata (BBCC)

(2015) Hiroshi Yamagishi et al.   GENOME

The radish genome and comprehensive gene expression profile of tuberous root formation and development

(2015) Yuki Mitsui et al.   Scientific Reports

RNA-seq based SNPs for mapping in Brassica juncea (AABB): synteny analysis between the two constituent genomes A (from B. rapa) and B (from B. nigra) shows highly divergent gene block arrangement and unique block fragmentation patterns

(2014) Kumar Paritosh et al.   BMC GENOMICS

Draft Sequences of the Radish (Raphanus sativus L.) Genome

(2014) Hiroyasu Kitashiba et al.   DNA RESEARCH

De novo assembly and characterization of the complete chloroplast genome of radish (Raphanus sativus L.)

(2014) Young-Min Jeong et al.   GENE

The complete mitochondrial genome of cultivated radishWK10039(Raphanus sativusL.)

(2014) Young-Min Jeong et al.   Mitochondrial DNA

Consequences of Whole-Genome Triplication as Revealed by Comparative Genomic Analyses of the Wild Radish Raphanus raphanistrum and Three Other Brassicaceae Species

(2014) G. D. Moghe et al.   PLANT CELL

Construction of a reference genetic map of Raphanus sativus based on genotyping by whole-genome resequencing

(2014) Jeong-Hwan Mun et al.   THEORETICAL AND APPLIED GENETICS

Comparative analysis of the radish genome based on a conserved ortholog set (COS) of Brassica

(2014) Young-Min Jeong et al.   THEORETICAL AND APPLIED GENETICS

Genome triplication drove the diversification of Brassica plants

(2014) Feng Cheng et al.   Horticulture Research

RCircos: an R package for Circos 2D track plots

(2013) Hongen Zhang et al.   BMC BIOINFORMATICS

Conserved microstructure of the Brassica B Genome of Brassica nigra in relation to homologous regions of Arabidopsis thaliana, B. rapa and B. oleracea

(2013) Zahra-Katy Navabi et al.   BMC GENOMICS

De novo transcriptome sequencing of radish (Raphanus sativus L.) and analysis of major genes involved in glucosinolate metabolism

(2013) Yan Wang et al.   BMC GENOMICS

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Deciphering the Diploid Ancestral Genome of the MesohexaploidBrassica rapa

(2013) Feng Cheng et al.   PLANT CELL

Transcriptome Profiling of Radish (Raphanus sativus L.) Root and Identification of Genes Involved in Response to Lead (Pb) Stress with Next Generation Sequencing

(2013) Yan Wang et al.   PLoS One

Identification and profiling of novel microRNAs in the Brassica rapa genome based on small RNA deep sequencing

(2012) Bumjin Kim et al.   BMC PLANT BIOLOGY

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

(2012) Cole Trapnell et al.   Nature Protocols

MIPS PlantsDB: a database framework for comparative plant genome research

(2012) Thomas Nussbaumer et al.   NUCLEIC ACIDS RESEARCH

MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity

(2012) Y. Wang et al.   NUCLEIC ACIDS RESEARCH

RadishBase: A Database for Genomics and Genetics of Radish

(2012) Di Shen et al.   PLANT AND CELL PHYSIOLOGY

Transcriptome analysis of the roots at early and late seedling stages using Illumina paired-end sequencing and development of EST-SSR markers in radish

(2012) Shufen Wang et al.   PLANT CELL REPORTS

Biased Gene Fractionation and Dominant Gene Expression among the Subgenomes of Brassica rapa

(2012) Feng Cheng et al.   PLoS One

A fast, lock-free approach for efficient parallel counting of occurrences of k-mers

(2011) Guillaume Marçais et al.   BIOINFORMATICS

Mitochondrial genome sequencing helps show the evolutionary mechanism of mitochondrial genome formation in Brassica

(2011) Shengxin Chang et al.   BMC GENOMICS

Extensive Chromosome Homoeology among Brassiceae Species Were Revealed by Comparative Genetic Mapping with High-Density EST-Based SNP Markers in Radish (Raphanus sativus L.)

(2011) F. Li et al.   DNA RESEARCH

The mosaic of ancestral karyotype blocks in the Sinapis alba L. genome

(2011) Matthew N. Nelson et al.   GENOME

The genome of the mesopolyploid crop species Brassica rapa

(2011) Xiaowu Wang et al.   NATURE GENETICS

Fast and SNP-tolerant detection of complex variants and splicing in short reads

(2010) T. D. Wu et al.   BIOINFORMATICS

The Rate and Molecular Spectrum of Spontaneous Mutations in Arabidopsis thaliana

(2010) S. Ossowski et al.   SCIENCE

Developing stable progenies of ×Brassicoraphanus, an intergeneric allopolyploid between Brassica rapa and Raphanus sativus, through induced mutation using microspore culture

(2010) Soo-Seong Lee et al.   THEORETICAL AND APPLIED GENETICS

Sequence and structure of Brassica rapa chromosome A3

(2010) Jeong-Hwan Mun et al.   GENOME BIOLOGY

The sequence and de novo assembly of the giant panda genome

(2009) Ruiqiang Li et al.   NATURE

Genome-wide comparative analysis of the Brassica rapa gene space reveals genome shrinkage and differential loss of duplicated genes after whole genome triplication

(2009) Jeong-Hwan Mun et al.   GENOME BIOLOGY

Comparative mapping of Brassica juncea and Arabidopsis thaliana using Intron Polymorphism (IP) markers: homoeologous relationships, diversification and evolution of the A, B and C Brassica genomes

(2008) Priya Panjabi et al.   BMC GENOMICS

Molecular systematics ofBrassicaand allied genera in subtribes Brassicinae, Raphaninae, Moricandiinae, and Cakilinae (Brassicaceae, tribe Brassiceae); the organization and evolution of ribosomal gene families

(2008) RANJANA NAGPAL et al.   BOTANICAL JOURNAL OF THE LINNEAN SOCIETY

Genetic diversity of cultivated and wild radish and phylogenetic relationships among Raphanus and Brassica species revealed by the analysis of trnK/matK sequence

(2008) Na Lü et al.   BREEDING SCIENCE

Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments

(2008) Brian J Haas et al.   GENOME BIOLOGY