Identification and profiling of novel microRNAs in the Brassica rapa genome based on small RNA deep sequencing

Transcriptome-wide identification and characterization of miRNAs from Pinus densata

(2012) Li-Chuan Wan et al.   BMC GENOMICS

Origins and Evolution of MicroRNA Genes in Plant Species

(2012) Masafumi Nozawa et al.   Genome Biology and Evolution

Discovery of Novel MicroRNAs in Rat Kidney Using Next Generation Sequencing and Microarray Validation

(2012) Fanxue Meng et al.   PLoS One

Biased Gene Fractionation and Dominant Gene Expression among the Subgenomes of Brassica rapa

(2012) Feng Cheng et al.   PLoS One

Identification and Characterization of MicroRNAs in Asiatic Cotton (Gossypium arboreum L.)

(2012) Min Wang et al.   PLoS One

Wheat Hybridization and Polyploidization Results in Deregulation of Small RNAs

(2011) Michal Kenan-Eichler et al.   GENETICS

Identification of conserved microRNAs and their targets in Chinese cabbage (Brassica rapa subsp. pekinensis)

(2011) Jinyan Wang et al.   GENOME

Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering

(2011) Matthias Hackl et al.   JOURNAL OF BIOTECHNOLOGY

Identification of potential microRNAs and their targets in Brassica rapa L.

(2011) Vignesh Dhandapani et al.   MOLECULES AND CELLS

The genome of the mesopolyploid crop species Brassica rapa

(2011) Xiaowu Wang et al.   NATURE GENETICS

psRNATarget: a plant small RNA target analysis server

(2011) Xinbin Dai et al.   NUCLEIC ACIDS RESEARCH

Identification and Characterization of microRNAs from Peanut (Arachis hypogaea L.) by High-Throughput Sequencing

(2011) Xiaoyuan Chi et al.   PLoS One

Deep sequencing of small RNA libraries reveals dynamic regulation of conserved and novel microRNAs and microRNA-stars during silkworm development

(2010) Guru Jagadeeswaran et al.   BMC GENOMICS

Genome sequence of the palaeopolyploid soybean

(2010) Jeremy Schmutz et al.   NATURE

miRBase: integrating microRNA annotation and deep-sequencing data

(2010) A. Kozomara et al.   NUCLEIC ACIDS RESEARCH

Arabidopsis lyrataSmall RNAs: TransientMIRNAand Small Interfering RNA Loci within theArabidopsisGenus

(2010) Zhaorong Ma et al.   PLANT CELL

Accurate identification of orthologous segments among multiple genomes

(2009) Tsuyoshi Hachiya et al.   BIOINFORMATICS

Cloning, characterization and expression analysis of porcine microRNAs

(2009) Alavala Reddy et al.   BMC GENOMICS

Circos: An information aesthetic for comparative genomics

(2009) M. Krzywinski et al.   GENOME RESEARCH

Biotic and abiotic stress down-regulate miR398 expression in Arabidopsis

(2009) Guru Jagadeeswaran et al.   PLANTA

Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development

(2009) Masaomi Kato et al.   GENOME BIOLOGY

Genome-wide comparative analysis of the Brassica rapa gene space reveals genome shrinkage and differential loss of duplicated genes after whole genome triplication

(2009) Jeong-Hwan Mun et al.   GENOME BIOLOGY

Evolutionary Genetics of Genome Merger and Doubling in Plants

(2008) Jeff J. Doyle et al.   Annual Review of Genetics

Evolution of microRNAs and their targets: Are all microRNAs biologically relevant?

(2008) M AXTELL   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

High-throughput sequencing of Medicago truncatula short RNAs identifies eight new miRNA families

(2008) Gyorgy Szittya et al.   BMC GENOMICS

Selection and mutation on microRNA target sequences during rice evolution

(2008) Xingyi Guo et al.   BMC GENOMICS

Identification of novel and candidate miRNAs in rice by high throughput sequencing

(2008) Ramanjulu Sunkar et al.   BMC PLANT BIOLOGY

Comparative analysis of the small RNA transcriptomes of Pinus contorta and Oryza sativa

(2008) R. D. Morin et al.   GENOME RESEARCH