Mapping by sequencing in cotton (Gossypium hirsutum) line MD52ne identified candidate genes for fiber strength and its related quality attributes

Comparative fiber property and transcriptome analyses reveal key genes potentially related to high fiber strength in cotton (Gossypium hirsutum L.) line MD52ne

(2016) Md S. Islam et al.   BMC PLANT BIOLOGY

Identification of stable QTLs controlling fiber traits properties in multi-environment using recombinant inbred lines in Upland cotton (Gossypium hirsutum L.)

(2015) Lianguang Shang et al.   EUPHYTICA

Sequencing of allotetraploid cotton (Gossypium hirsutum L. acc. TM-1) provides a resource for fiber improvement

(2015) Tianzhen Zhang et al.   NATURE BIOTECHNOLOGY

The plant cell wall integrity maintenance mechanism – A case study of a cell wall plasma membrane signaling network

(2015) Thorsten Hamann   PHYTOCHEMISTRY

Mapping-by-sequencing of Ligon-lintless-1 (Li 1 ) reveals a cluster of neighboring genes with correlated expression in developing fibers of Upland cotton (Gossypium hirsutum L.)

(2015) Gregory N. Thyssen et al.   THEORETICAL AND APPLIED GENETICS

Quantitative trait loci analysis of fiber quality traits using a random-mated recombinant inbred population in Upland cotton (Gossypium hirsutum L.)

(2014) David D Fang et al.   BMC GENOMICS

Cotton fiber elongation network revealed by expression profiling of longer fiber lines introgressed with different Gossypium barbadense chromosome segments

(2014) Lei Fang et al.   BMC GENOMICS

Identification of cotton fiber quality quantitative trait loci using intraspecific crosses derived from two near-isogenic lines differing in fiber bundle strength

(2014) Md. S. Islam et al.   MOLECULAR BREEDING

Genome sequence of the cultivated cotton Gossypium arboreum

(2014) Fuguang Li et al.   NATURE GENETICS

The Li2 Mutation Results in Reduced Subgenome Expression Bias in Elongating Fibers of Allotetraploid Cotton (Gossypium hirsutum L.)

(2014) Marina Naoumkina et al.   PLoS One

Comparative Transcriptome Analysis of Short Fiber Mutants Ligon-Lintless 1 And 2 Reveals Common Mechanisms Pertinent to Fiber Elongation in Cotton (Gossypium hirsutum L.)

(2014) Matthew K. Gilbert et al.   PLoS One

Transcriptomic Analysis of Fiber Strength in Upland Cotton Chromosome Introgression Lines Carrying Different Gossypium barbadense Chromosomal Segments

(2014) Lei Fang et al.   PLoS One

Understanding the influence of fiber length on the High Volume Instrument™ measurement of cotton fiber strength

(2014) Geoffrey RS Naylor et al.   TEXTILE RESEARCH JOURNAL

Next generation genetic mapping of the Ligon-lintless-2 (Li 2) locus in upland cotton (Gossypium hirsutum L.)

(2014) Gregory N. Thyssen et al.   THEORETICAL AND APPLIED GENETICS

Functional analyses of cotton (Gossypium hirsutum L.) immature fiber (im) mutant infer that fiber cell wall development is associated with stress responses

(2013) Hee Kim et al.   BMC GENOMICS

A comprehensive meta QTL analysis for fiber quality, yield, yield related and morphological traits, drought tolerance, and disease resistance in tetraploid cotton

(2013) Joseph I Said et al.   BMC GENOMICS

The Arabidopsis LRR-RLK, PXC1, is a regulator of secondary wall formation correlated with the TDIF-PXY/TDR-WOX4 signaling pathway

(2013) Jiehua Wang et al.   BMC PLANT BIOLOGY

Fine-mapping a fibre strength QTLQFS-D11-1on cotton chromosome 21 using introgressed lines

(2013) Chengfu Su et al.   PLANT BREEDING

Variations and Transmission of QTL Alleles for Yield and Fiber Qualities in Upland Cotton Cultivars Developed in China

(2013) Tianzhen Zhang et al.   PLoS One

PolyCat: A Resource for Genome Categorization of Sequencing Reads From Allopolyploid Organisms

(2013) Justin T. Page et al.   G3-Genes Genomes Genetics

Primer-BLAST: A tool to design target-specific primers for polymerase chain reaction

(2012) Jian Ye et al.   BMC BIOINFORMATICS

Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres

(2012) Andrew H. Paterson et al.   NATURE

A High Density Consensus Genetic Map of Tetraploid Cotton That Integrates Multiple Component Maps through Molecular Marker Redundancy Check

(2012) Anna Blenda et al.   PLoS One

Mapping quantitative trait loci for lint yield and fiber quality across environments in a Gossypium hirsutum × Gossypium barbadense backcross inbred line population

(2012) Jiwen Yu et al.   THEORETICAL AND APPLIED GENETICS

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

Elevated Growing Degree Days Influence Transition Stage Timing During Cotton Fiber Development Resulting in Increased Fiber-Bundle Strength

(2011) Doug J. Hinchliffe et al.   CROP SCIENCE

Genetic mapping and quantitative trait locus analysis of fiber quality traits using a three-parent composite population in upland cotton (Gossypium hirsutum L.)

(2011) Ke Zhang et al.   MOLECULAR BREEDING

Cellulose synthesis via the FEI2 RLK/SOS5 pathway and CELLULOSE SYNTHASE 5 is required for the structure of seed coat mucilage in Arabidopsis

(2011) Smadar Harpaz-Saad et al.   PLANT JOURNAL

Characterization of the plasma membrane proteins and receptor-like kinases associated with secondary vascular differentiation in poplar

(2011) Dongliang Song et al.   PLANT MOLECULAR BIOLOGY

A thaumatin-like protein gene involved in cotton fiber secondary cell wall development enhances resistance against Verticillium dahliae and other stresses in transgenic tobacco

(2010) M. Farooq Hussain Munis et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Fast and SNP-tolerant detection of complex variants and splicing in short reads

(2010) T. D. Wu et al.   BIOINFORMATICS

Complementary genetic and genomic approaches help characterize the linkage group I seed protein QTL in soybean

(2010) Yung-Tsi Bolon et al.   BMC PLANT BIOLOGY

Verification and fine-mapping of QTLs conferring days to flowering in soybean using residual heterozygous lines

(2010) ChengFu Su et al.   CHINESE SCIENCE BULLETIN

Fine mapping QMi-C11 a major QTL controlling root-knot nematodes resistance in Upland cotton

(2010) Xinlian Shen et al.   THEORETICAL AND APPLIED GENETICS

Near-isogenic cotton germplasm lines that differ in fiber-bundle strength have temporal differences in fiber gene expression patterns as revealed by comparative high-throughput profiling

(2010) Doug J. Hinchliffe et al.   THEORETICAL AND APPLIED GENETICS

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

The MIQE Guidelines: Minimum Information for Publication of Quantitative Real-Time PCR Experiments

(2009) S. A. Bustin et al.   CLINICAL CHEMISTRY

Two Leucine-Rich Repeat Receptor Kinases Mediate Signaling, Linking Cell Wall Biosynthesis and ACC Synthase in Arabidopsis

(2008) S.-L. Xu et al.   PLANT CELL

QTL mapping of yield and fiber traits based on a four-way cross population in Gossypium hirsutum L.

(2008) Hongde Qin et al.   THEORETICAL AND APPLIED GENETICS