Computational Performance and Statistical Accuracy of *BEAST and Comparisons with Other Methods
出版年份 2016 全文链接
标题
Computational Performance and Statistical Accuracy of *BEAST and Comparisons with Other Methods
作者
关键词
-
出版物
SYSTEMATIC BIOLOGY
Volume 65, Issue 3, Pages 381-396
出版商
Oxford University Press (OUP)
发表日期
2016-01-29
DOI
10.1093/sysbio/syv118
参考文献
相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。- The gene tree delusion
- (2016) Mark S. Springer et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- ASTRAL-II: coalescent-based species tree estimation with many hundreds of taxa and thousands of genes
- (2015) Siavash Mirarab et al. BIOINFORMATICS
- The Effects of Partitioning on Phylogenetic Inference
- (2015) David Kainer et al. MOLECULAR BIOLOGY AND EVOLUTION
- Likelihood-based tree reconstruction on a concatenation of aligned sequence data sets can be statistically inconsistent
- (2015) Sebastien Roch et al. THEORETICAL POPULATION BIOLOGY
- Quartet Inference from SNP Data Under the Coalescent Model
- (2014) Julia Chifman et al. BIOINFORMATICS
- ASTRAL: genome-scale coalescent-based species tree estimation
- (2014) S. Mirarab et al. BIOINFORMATICS
- RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
- (2014) Alexandros Stamatakis BIOINFORMATICS
- A comprehensive multilocus phylogeny of the Neotropical cotingas (Cotingidae, Aves) with a comparative evolutionary analysis of breeding system and plumage dimorphism and a revised phylogenetic classification
- (2014) Jacob S. Berv et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- Phylogenetic analysis at deep timescales: Unreliable gene trees, bypassed hidden support, and the coalescence/concatalescence conundrum
- (2014) John Gatesy et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- Evaluating Summary Methods for Multilocus Species Tree Estimation in the Presence of Incomplete Lineage Sorting
- (2014) Siavash Mirarab et al. SYSTEMATIC BIOLOGY
- BEAST 2: A Software Platform for Bayesian Evolutionary Analysis
- (2014) Remco Bouckaert et al. PLoS Computational Biology
- Naive binning improves phylogenomic analyses
- (2013) Md Shamsuzzoha Bayzid et al. BIOINFORMATICS
- Simulating gene trees under the multispecies coalescent and time-dependent migration
- (2013) Joseph Heled et al. BMC EVOLUTIONARY BIOLOGY
- Looking for trees in the forest: summary tree from posterior samples
- (2013) Joseph Heled et al. BMC EVOLUTIONARY BIOLOGY
- How low can you go? The effects of mutation rate on the accuracy of species-tree estimation
- (2013) Hayley C. Lanier et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- Concatenation versus coalescence versus "concatalescence"
- (2013) J. Gatesy et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Inferring Phylogeny and Introgression using RADseq Data: An Example from Flowering Plants (Pedicularis: Orobanchaceae)
- (2013) Deren A. R. Eaton et al. SYSTEMATIC BIOLOGY
- The Influence of Gene Flow on Species Tree Estimation: A Simulation Study
- (2013) Adam D. Leaché et al. SYSTEMATIC BIOLOGY
- Transcriptome-based exon capture enables highly cost-effective comparative genomic data collection at moderate evolutionary scales
- (2012) Ke Bi et al. BMC GENOMICS
- Inferring Species Trees Directly from Biallelic Genetic Markers: Bypassing Gene Trees in a Full Coalescent Analysis
- (2012) David Bryant et al. MOLECULAR BIOLOGY AND EVOLUTION
- Anchored Hybrid Enrichment for Massively High-Throughput Phylogenomics
- (2012) Alan R. Lemmon et al. SYSTEMATIC BIOLOGY
- Ultraconserved Elements Anchor Thousands of Genetic Markers Spanning Multiple Evolutionary Timescales
- (2012) Brant C. Faircloth et al. SYSTEMATIC BIOLOGY
- Comparative RNA sequencing reveals substantial genetic variation in endangered primates
- (2011) G. H. Perry et al. GENOME RESEARCH
- Applications of next-generation sequencing to phylogeography and phylogenetics
- (2011) John E. McCormack et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- Genome-wide genetic marker discovery and genotyping using next-generation sequencing
- (2011) John W. Davey et al. NATURE REVIEWS GENETICS
- Coalescent Histories on Phylogenetic Networks and Detection of Hybridization Despite Incomplete Lineage Sorting
- (2011) Yun Yu et al. SYSTEMATIC BIOLOGY
- Comparing Two Bayesian Methods for Gene Tree/Species Tree Reconstruction: Simulations with Incomplete Lineage Sorting and Horizontal Gene Transfer
- (2011) Yujin Chung et al. SYSTEMATIC BIOLOGY
- Guided Tree Topology Proposals for Bayesian Phylogenetic Inference
- (2011) Sebastian Höhna et al. SYSTEMATIC BIOLOGY
- Accuracy and Precision of Species Trees: Effects of Locus, Individual, and Base Pair Sampling on Inference of Species Trees in Lizards of the Liolaemus darwinii Group (Squamata, Liolaemidae)
- (2011) Arley Camargo et al. SYSTEMATIC BIOLOGY
- Missing Data in Phylogenetic Analysis: Reconciling Results from Simulations and Empirical Data
- (2011) John J. Wiens et al. SYSTEMATIC BIOLOGY
- The expected length of pendant and interior edges of a Yule tree
- (2010) Mike Steel et al. APPLIED MATHEMATICS LETTERS
- BUCKy: Gene tree/species tree reconciliation with Bayesian concordance analysis
- (2010) Bret R. Larget et al. BIOINFORMATICS
- DendroPy: a Python library for phylogenetic computing
- (2010) J. Sukumaran et al. BIOINFORMATICS
- A maximum pseudo-likelihood approach for estimating species trees under the coalescent model
- (2010) Liang Liu et al. BMC EVOLUTIONARY BIOLOGY
- Target-enrichment strategies for next-generation sequencing
- (2010) Lira Mamanova et al. NATURE METHODS
- Dating Primate Divergences through an Integrated Analysis of Palaeontological and Molecular Data
- (2010) Richard D. Wilkinson et al. SYSTEMATIC BIOLOGY
- The Accuracy of Species Tree Estimation under Simulation: A Comparison of Methods
- (2010) Adam D. Leaché et al. SYSTEMATIC BIOLOGY
- A Statistical Approach for Distinguishing Hybridization and Incomplete Lineage Sorting
- (2009) Simon Joly et al. AMERICAN NATURALIST
- STEM: species tree estimation using maximum likelihood for gene trees under coalescence
- (2009) Laura S. Kubatko et al. BIOINFORMATICS
- Fast and Consistent Estimation of Species Trees Using Supermatrix Rooted Triples
- (2009) Michael DeGiorgio et al. MOLECULAR BIOLOGY AND EVOLUTION
- Bayesian Inference of Species Trees from Multilocus Data
- (2009) J. Heled et al. MOLECULAR BIOLOGY AND EVOLUTION
- Identifying Hybridization Events in the Presence of Coalescence via Model Selection
- (2009) Laura Salter Kubatko SYSTEMATIC BIOLOGY
- Estimating Species Phylogenies Using Coalescence Times among Sequences
- (2009) Liang Liu et al. SYSTEMATIC BIOLOGY
- BEST: Bayesian estimation of species trees under the coalescent model
- (2008) L. Liu BIOINFORMATICS
- ESTIMATING SPECIES TREES USING MULTIPLE-ALLELE DNA SEQUENCE DATA
- (2008) Liang Liu et al. EVOLUTION
- The conditioned reconstructed process
- (2008) Tanja Gernhard JOURNAL OF THEORETICAL BIOLOGY
- Rapid SNP Discovery and Genetic Mapping Using Sequenced RAD Markers
- (2008) Nathan A. Baird et al. PLoS One
- Evolutionary history and the effect of biodiversity on plant productivity
- (2008) M. W. Cadotte et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
Publish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn MoreAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started