Functional and topological diversity of LOV domain photoreceptors

Ubiquitous distribution of helmchrome in phototactic swarmers of the stramenopiles

(2015) Gang Fu et al.   PROTOPLASMA

InterProScan 5: genome-scale protein function classification

(2014) P. Jones et al.   BIOINFORMATICS

The Evolution of the GPCR Signaling System in Eukaryotes: Modularity, Conservation, and the Transition to Metazoan Multicellularity

(2014) Alex de Mendoza et al.   Genome Biology and Evolution

Blue Light-induced Dimerization of Monomeric Aureochrome-1 Enhances Its Affinity for the Target Sequence

(2014) Osamu Hisatomi et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

An optogenetic gene expression system with rapid activation and deactivation kinetics

(2014) Laura B Motta-Mena et al.   Nature Chemical Biology

Independent optical excitation of distinct neural populations

(2014) Nathan C Klapoetke et al.   NATURE METHODS

Noninvasive optical inhibition with a red-shifted microbial rhodopsin

(2014) Amy S Chuong et al.   NATURE NEUROSCIENCE

The InterPro protein families database: the classification resource after 15 years

(2014) Alex Mitchell et al.   NUCLEIC ACIDS RESEARCH

Full-length structure of a monomeric histidine kinase reveals basis for sensory regulation

(2014) Giomar Rivera-Cancel et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Proteomics Analysis of Heterogeneous Flagella in Brown Algae (Stramenopiles)

(2014) Gang Fu et al.   PROTIST

Data access for the 1,000 Plants (1KP) project

(2014) Naim Matasci et al.   GigaScience

Blue Light Regulated Two-Component Systems: Enzymatic and Functional Analyses of Light-Oxygen-Voltage (LOV)-Histidine Kinases and Downstream Response Regulators

(2013) Fernando Correa et al.   BIOCHEMISTRY

Investigating Models of Protein Function and Allostery With a Widespread Mutational Analysis of a Light-Activated Protein

(2013) Josiah P. Zayner et al.   BIOPHYSICAL JOURNAL

Light-induced Conformational Changes of LOV1 (Light Oxygen Voltage-sensing Domain 1) and LOV2 Relative to the Kinase Domain and Regulation of Kinase Activity inChlamydomonasPhototropin

(2013) Koji Okajima et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

RepeatsDB: a database of tandem repeat protein structures

(2013) Tomás Di Domenico et al.   NUCLEIC ACIDS RESEARCH

Pfam: the protein families database

(2013) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

Distance-tree analysis, distribution and co-presence of bilin- and flavin-binding prokaryotic photoreceptors for visible light

(2013) Carmen Mandalari et al.   PHOTOCHEMICAL & PHOTOBIOLOGICAL SCIENCES

The Amborella Genome and the Evolution of Flowering Plants

(2013) et al.   SCIENCE

Full-Length Structure of a Sensor Histidine Kinase Pinpoints Coaxial Coiled Coils as Signal Transducers and Modulators

(2013) Ralph P. Diensthuber et al.   STRUCTURE

The Evolution of Flavin-Binding Photoreceptors: An Ancient Chromophore Serving Trendy Blue-Light Sensors

(2012) Aba Losi et al.   Annual Review of Plant Biology

Identification of Natural and Artificial DNA Substrates for Light-Activated LOV–HTH Transcription Factor EL222

(2012) Giomar Rivera-Cancel et al.   BIOCHEMISTRY

CD-HIT: accelerated for clustering the next-generation sequencing data

(2012) Limin Fu et al.   BIOINFORMATICS

Designing Photoswitchable Peptides Using the AsLOV2 Domain

(2012) Oana I. Lungu et al.   CHEMISTRY & BIOLOGY

Optogenetically Induced Behavioral and Functional Network Changes in Primates

(2012) Annelies Gerits et al.   CURRENT BIOLOGY

LOV to BLUF: Flavoprotein Contributions to the Optogenetic Toolkit

(2012) John M. Christie et al.   Molecular Plant

Spatiotemporal control of gene expression by a light-switchable transgene system

(2012) Xue Wang et al.   NATURE METHODS

Optogenetic Inactivation Modifies Monkey Visuomotor Behavior

(2012) James Cavanaugh et al.   NEURON

Tandem repeats in proteins: From sequence to structure

(2011) Andrey V. Kajava   JOURNAL OF STRUCTURAL BIOLOGY

Function, structure and mechanism of bacterial photosensory LOV proteins

(2011) Julien Herrou et al.   NATURE REVIEWS MICROBIOLOGY

HMMER web server: interactive sequence similarity searching

(2011) R. D. Finn et al.   NUCLEIC ACIDS RESEARCH

Metagenome-based Screening Reveals Worldwide Distribution of LOV-Domain Proteins

(2011) Gopal P. Pathak et al.   PHOTOCHEMISTRY AND PHOTOBIOLOGY

Structure of a Light-Activated LOV Protein Dimer That Regulates Transcription

(2011) A. T. Vaidya et al.   Science Signaling

Eight RGS and RGS-like Proteins Orchestrate Growth, Differentiation, and Pathogenicity of Magnaporthe oryzae

(2011) Haifeng Zhang et al.   PLoS Pathogens

Ligand-Binding PAS Domains in a Genomic, Cellular, and Structural Context

(2010) Jonathan T. Henry et al.   Annual Review of Microbiology

An Analysis of the Solution Structure and Signaling Mechanism of LovK, a Sensor Histidine Kinase Integrating Light and Redox Signals

(2010) Erin B. Purcell et al.   BIOCHEMISTRY

Tripping the Light Fantastic: Blue-Light Photoreceptors as Examples of Environmentally Modulated Protein−Protein Interactions

(2010) Brian D. Zoltowski et al.   BIOCHEMISTRY

Kinetics of Conformational Changes of the FKF1-LOV Domain upon Photoexcitation

(2010) Yusuke Nakasone et al.   BIOPHYSICAL JOURNAL

Photoadaptation in Neurospora by Competitive Interaction of Activating and Inhibitory LOV Domains

(2010) Erik Malzahn et al.   CELL

A glimpse into the basis of vision in the kingdom Mycota

(2010) Alexander Idnurm et al.   FUNGAL GENETICS AND BIOLOGY

Addition at the Molecular Level: Signal Integration in Designed Per–ARNT–Sim Receptor Proteins

(2010) Andreas Möglich et al.   JOURNAL OF MOLECULAR BIOLOGY

Draft genome sequence of the oilseed species Ricinus communis

(2010) Agnes P Chan et al.   NATURE BIOTECHNOLOGY

Engineered photoreceptors as novel optogenetic tools

(2010) Andreas Möglich et al.   PHOTOCHEMICAL & PHOTOBIOLOGICAL SCIENCES

Physical interaction between VIVID and white collar complex regulates photoadaptation in Neurospora

(2010) C.-H. Chen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

VIVID interacts with the WHITE COLLAR complex and FREQUENCY-interacting RNA helicase to alter light and clock responses in Neurospora

(2010) S. M. Hunt et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Oligomeric structure of LOV domains inArabidopsisphototropin

(2009) Hitomi Katsura et al.   FEBS LETTERS

Distribution and Phylogeny of Light-Oxygen-Voltage-Blue-Light-Signaling Proteins in the Three Kingdoms of Life

(2009) U. Krauss et al.   JOURNAL OF BACTERIOLOGY

Structural and mechanistic determinants of c-di-GMP signalling

(2009) Tilman Schirmer et al.   NATURE REVIEWS MICROBIOLOGY

MEME SUITE: tools for motif discovery and searching

(2009) T. L. Bailey et al.   NUCLEIC ACIDS RESEARCH

Distribution and phylogeny of the blue light receptors aureochromes in eukaryotes

(2009) Mié Ishikawa et al.   PLANTA

Structure and Signaling Mechanism of Per-ARNT-Sim Domains

(2009) Andreas Möglich et al.   STRUCTURE

Light Activation of the LOV Protein Vivid Generates a Rapidly Exchanging Dimer†‡

(2008) Brian D. Zoltowski et al.   BIOCHEMISTRY

Design and Signaling Mechanism of Light-Regulated Histidine Kinases

(2008) Andreas Möglich et al.   JOURNAL OF MOLECULAR BIOLOGY

Light-activated DNA binding in a designed allosteric protein

(2008) D. Strickland et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Phosphorylation-Independent Regulation of the Diguanylate Cyclase WspR

(2008) Nabanita De et al.   PLOS BIOLOGY