Complete mitochondrial genome of the Verticillium-wilt causing plant pathogen Verticillium nonalfalfae

The Genome of the Saprophytic Fungus Verticillium tricorpus Reveals a Complex Effector Repertoire Resembling That of Its Pathogenic Relatives

(2015) Michael F. Seidl et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Intronic and plasmid-derived regions contribute to the large mitochondrial genome sizes of Agaricomycetes

(2014) Kajsa Himmelstrand et al.   CURRENT GENETICS

High Variability of Mitochondrial Gene Order among Fungi

(2014) Gabriela Aguileta et al.   Genome Biology and Evolution

The 203 kbp Mitochondrial Genome of the Phytopathogenic Fungus Sclerotinia borealis Reveals Multiple Invasions of Introns and Genomic Duplications

(2014) Andrey V. Mardanov et al.   PLoS One

RNA-seq analyses of gene expression in the microsclerotia of Verticillium dahliae

(2013) Dechassa Duressa et al.   BMC GENOMICS

Comparative analysis of mitochondrial genomes from closely related Rhynchosporium species reveals extensive intron invasion

(2013) Stefano F.F. Torriani et al.   FUNGAL GENETICS AND BIOLOGY

Extensive chromosomal reshuffling drives evolution of virulence in an asexual pathogen

(2013) R. de Jonge et al.   GENOME RESEARCH

Identification and Differentiation of Verticillium Species and V. longisporum Lineages by Simplex and Multiplex PCR Assays

(2013) Patrik Inderbitzin et al.   PLoS One

Characterization and Phylogenetic Analysis of the Mitochondrial Genome of Glarea lozoyensis Indicates High Diversity within the Order Helotiales

(2013) Loubna Youssar et al.   PLoS One

Mitochondrial Genome Evolution in a Single Protoploid Yeast Species

(2013) Paul P. Jung et al.   G3-Genes Genomes Genetics

Complete mitochondrial genome of the aluminum-tolerant fungusRhodotorula taiwanensisRS1 and comparative analysis ofBasidiomycotamitochondrial genomes

(2013) Xue Qiang Zhao et al.   MicrobiologyOpen

A molecular phylogeny of thermophilic fungi

(2012) Ingo Morgenstern et al.   Fungal Biology

The mitochondrial genome of the white-rot fungus Flammulina velutipes

(2012) Hyeokjun Yoon et al.   JOURNAL OF GENERAL AND APPLIED MICROBIOLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

An Integrated Pipeline for de Novo Assembly of Microbial Genomes

(2012) Andrew Tritt et al.   PLoS One

MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects

(2011) Carson Holt et al.   BMC BIOINFORMATICS

Comparative analysis of Fusarium mitochondrial genomes reveals a highly variable region that encodes an exceptionally large open reading frame

(2011) Rasha M. Al-Reedy et al.   FUNGAL GENETICS AND BIOLOGY

Phylogenetics and Taxonomy of the Fungal Vascular Wilt Pathogen Verticillium, with the Descriptions of Five New Species

(2011) Patrik Inderbitzin et al.   PLoS One

Comparative Genomics Yields Insights into Niche Adaptation of Plant Vascular Wilt Pathogens

(2011) Steven J. Klosterman et al.   PLoS Pathogens

Mitochondrial inheritance in fungi

(2010) Christoph W Basse   CURRENT OPINION IN MICROBIOLOGY

Analysis of the complete mitochondrial genome sequences of the soybean rust pathogens Phakopsora pachyrhizi and P. meibomiae

(2010) Christine L. Stone et al.   MYCOLOGIA

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

VARNA: Interactive drawing and editing of the RNA secondary structure

(2009) Kévin Darty et al.   BIOINFORMATICS

Comparison of mycelial proteomes of two Verticillium albo-atrum pathotypes from hop

(2009) Stanislav Mandelc et al.   EUROPEAN JOURNAL OF PLANT PATHOLOGY

Circos: An information aesthetic for comparative genomics

(2009) M. Krzywinski et al.   GENOME RESEARCH

Molecular Evolution of the mtDNA Encoded rps3 Gene Among Filamentous Ascomycetes Fungi with an Emphasis on the Ophiostomatoid Fungi

(2009) Jyothi Sethuraman et al.   JOURNAL OF MOLECULAR EVOLUTION

Gene prediction in novel fungal genomes using an ab initio algorithm with unsupervised training

(2008) V. Ter-Hovhannisyan et al.   GENOME RESEARCH

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH