The ISW1 and CHD1 ATP-dependent chromatin remodelers compete to set nucleosome spacingin vivo

A brief review of nucleosome structure

(2015) Amber R. Cutter et al.   FEBS LETTERS

In Brief: Picturing the complex world of chromatin remodelling families

(2015) Leora Witkowski et al.   JOURNAL OF PATHOLOGY

Nucleosome Spacing Generated by ISWI and CHD1 Remodelers Is Constant Regardless of Nucleosome Density

(2015) Corinna Lieleg et al.   MOLECULAR AND CELLULAR BIOLOGY

Novel nucleosomal particles containing core histones and linker DNA but no histone H1

(2015) Hope A. Cole et al.   NUCLEIC ACIDS RESEARCH

Comparative Genomics Reveals Chd1 as a Determinant of Nucleosome Spacing in Vivo

(2015) Amanda L. Hughes et al.   G3-Genes Genomes Genetics

Regulating the Chromatin Landscape: Structural and Mechanistic Perspectives

(2014) Blaine Bartholomew   Annual Review of Biochemistry

Chromatin dynamics: Interplay between remodeling enzymes and histone modifications

(2014) Sarah G. Swygert et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Functional roles of nucleosome stability and dynamics

(2014) R. V. Chereji et al.   Briefings in Functional Genomics

Subnucleosomal Structures and Nucleosome Asymmetry across a Genome

(2014) Ho Sung Rhee et al.   CELL

RSC-dependent constructive and destructive interference between opposing arrays of phased nucleosomes in yeast

(2014) Dwaipayan Ganguli et al.   GENOME RESEARCH

Heavy transcription of yeast genes correlates with differential loss of histone H2B relative to H4 and queued RNA polymerases

(2014) Hope A. Cole et al.   NUCLEIC ACIDS RESEARCH

Ubiquitous nucleosome crowding in the yeast genome

(2014) R. V. Chereji et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Chd1 co-localizes with early transcription elongation factors independently of H3K36 methylation and releases stalled RNA polymerase II at introns

(2014) Daechan Park et al.   Epigenetics & Chromatin

Mechanisms and Functions of ATP-Dependent Chromatin-Remodeling Enzymes

(2013) Geeta J. Narlikar et al.   CELL

ISWI and CHD Chromatin Remodelers Bind Promoters but Act in Gene Bodies

(2013) Gabriel E. Zentner et al.   PLoS Genetics

ATP-dependent chromatin assembly is functionally distinct from chromatin remodeling

(2013) Sharon E Torigoe et al.   eLife

Genome-wide Nucleosome Specificity and Directionality of Chromatin Remodelers

(2012) Kuangyu Yen et al.   CELL

CHD1 remodelers regulate nucleosome spacingin vitroand align nucleosomal arrays over gene coding regions inS. pombe

(2012) Julia Pointner et al.   EMBO JOURNAL

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Chromatin remodelers Isw1 and Chd1 maintain chromatin structure during transcription by preventing histone exchange

(2012) Michaela Smolle et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Transcriptional activation of yeast genes disrupts intragenic nucleosome phasing

(2012) Feng Cui et al.   NUCLEIC ACIDS RESEARCH

A Key Role for Chd1 in Histone H3 Dynamics at the 3′ Ends of Long Genes in Yeast

(2012) Marta Radman-Livaja et al.   PLoS Genetics

Widespread remodeling of mid-coding sequence nucleosomes by Isw1

(2012) Itay Tirosh et al.   GENOME BIOLOGY

Integrative genomics viewer

(2011) James T Robinson et al.   NATURE BIOTECHNOLOGY

Activation-induced disruption of nucleosome position clusters on the coding regions of Gcn4-dependent genes extends into neighbouring genes

(2011) Hope A. Cole et al.   NUCLEIC ACIDS RESEARCH

The centromeric nucleosome of budding yeast is perfectly positioned and covers the entire centromere

(2011) H. A. Cole et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Role for Snf2-Related Nucleosome-Spacing Enzymes in Genome-Wide Nucleosome Organization

(2011) T. Gkikopoulos et al.   SCIENCE

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

The INO80 ATP-Dependent Chromatin Remodeling Complex Is a Nucleosome Spacing Factor

(2010) M. Udugama et al.   MOLECULAR AND CELLULAR BIOLOGY

Remosomes: RSC generated non-mobilized particles with approximately 180 bp DNA loosely associated with the histone octamer

(2010) M. S. Shukla et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Biology of Chromatin Remodeling Complexes

(2009) Cedric R. Clapier et al.   Annual Review of Biochemistry

Mechanisms that Specify Promoter Nucleosome Location and Identity

(2009) Paul D. Hartley et al.   CELL

Drosophila ISWI Regulates the Association of Histone H1 With Interphase Chromosomes in Vivo

(2009) G. Siriaco et al.   GENETICS

High-resolution nucleosome mapping reveals transcription-dependent promoter packaging

(2009) A. Weiner et al.   GENOME RESEARCH

Chromatin-dependent Transcription Factor Accessibility Rather than Nucleosome Remodeling Predominates during Global Transcriptional Restructuring in Saccharomyces cerevisiae

(2009) Karl A. Zawadzki et al.   MOLECULAR BIOLOGY OF THE CELL

A compiled and systematic reference map of nucleosome positions across the Saccharomyces cerevisiae genome

(2009) Cizhong Jiang et al.   GENOME BIOLOGY

A barrier nucleosome model for statistical positioning of nucleosomes throughout the yeast genome

(2008) T. N. Mavrich et al.   GENOME RESEARCH

Dynamic Remodeling of Individual Nucleosomes Across a Eukaryotic Genome in Response to Transcriptional Perturbation

(2008) Sushma Shivaswamy et al.   PLOS BIOLOGY

Distinct Modes of Regulation by Chromatin Encoded through Nucleosome Positioning Signals

(2008) Yair Field et al.   PLoS Computational Biology