incaRNAfbinv: a web server for the fragment-based design of RNA sequences

antaRNA: ant colony-based RNA sequence design

(2015) Robert Kleinkauf et al.   BIOINFORMATICS

ERD: a fast and reliable tool for RNA design including constraints

(2015) Ali Esmaili-Taheri et al.   BMC BIOINFORMATICS

Riboswitch engineering — making the all-important second and third steps

(2015) Christian Berens et al.   CURRENT OPINION IN BIOTECHNOLOGY

RNA-Redesign: a web server for fixed-backbone 3D design of RNA: Figure 1.

(2015) Joseph D. Yesselman et al.   NUCLEIC ACIDS RESEARCH

RNAiFold 2.0: a web server and software to design custom and Rfam-based RNA molecules

(2015) Juan Antonio Garcia-Martin et al.   NUCLEIC ACIDS RESEARCH

An Efficient Minimum Free Energy Structure-Based Search Method for Riboswitch Identification Based on Inverse RNA Folding

(2015) Matan Drory Retwitzer et al.   PLoS One

Design criteria for synthetic riboswitches acting on transcription

(2015) Manja Wachsmuth et al.   RNA Biology

Rfam 12.0: updates to the RNA families database

(2014) Eric P. Nawrocki et al.   NUCLEIC ACIDS RESEARCH

RNAfbinv: an interactive Java application for fragment-based design of RNA sequences

(2013) L. Weinbrand et al.   BIOINFORMATICS

A weighted sampling algorithm for the design of RNA sequences with targeted secondary structure and nucleotide distribution

(2013) Vladimir Reinharz et al.   BIOINFORMATICS

A Decade of Riboswitches

(2013) Alexander Serganov et al.   CELL

Using RNA inverse folding to identify IRES-like structural subdomains

(2013) Ivan Dotu et al.   RNA Biology

Frnakenstein: multiple target inverse RNA folding

(2012) Rune B Lyngsø et al.   BMC BIOINFORMATICS

Synthetic RNA switches as a tool for temporal and spatial control over gene expression

(2012) Andrew L Chang et al.   CURRENT OPINION IN BIOTECHNOLOGY

Reconstruction of Natural RNA Sequences from RNA Shape, Thermodynamic Stability, Mutational Robustness, and Linguistic Complexity by Evolutionary Computation

(2012) N. Dromi et al.   JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS

Multi-Objective Genetic Algorithm for Pseudoknotted RNA Sequence Design

(2012) Akito Taneda   Frontiers in Genetics

Multistrand RNA Secondary Structure Prediction and Nanostructure Design Including Pseudoknots

(2011) Eckart Bindewald et al.   ACS Nano

RNAexinv: An extended inverse RNA folding from shape and physical attributes to sequences

(2011) Assaf Avihoo et al.   BMC BIOINFORMATICS

Prospects for Riboswitch Discovery and Analysis

(2011) Ronald R. Breaker   MOLECULAR CELL

Nucleic acid sequence design via efficient ensemble defect optimization

(2010) Joseph N. Zadeh et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

VARNA: Interactive drawing and editing of the RNA secondary structure

(2009) Kévin Darty et al.   BIOINFORMATICS

Non-coding RNAs: regulators of disease

(2009) Ryan J Taft et al.   JOURNAL OF PATHOLOGY