Genetic consequences of Quaternary climatic oscillations in the Himalayas: Primula tibetica as a case study based on restriction site-associated DNA sequencing

Demographic history of speciation in aSenecioaltitudinal hybrid zone on Mt. Etna

(2016) Dmitry A. Filatov et al.   MOLECULAR ECOLOGY

Phylogeny and biogeography of Primula sect. Armerina: implications for plant evolution under climate change and the uplift of the Qinghai-Tibet Plateau

(2015) Guangpeng Ren et al.   BMC EVOLUTIONARY BIOLOGY

Colonization from divergent ancestors: glaciation signatures on contemporary patterns of genomic variation in Collared Pikas (Ochotona collaris)

(2015) Hayley C. Lanier et al.   MOLECULAR ECOLOGY

Arctic plant origins and early formation of circumarctic distributions: a case study of the mountain sorrel, Oxyria digyna

(2015) Qian Wang et al.   NEW PHYTOLOGIST

DIYABC v2.0: a software to make approximate Bayesian computation inferences about population history using single nucleotide polymorphism, DNA sequence and microsatellite data

(2014) Jean-Marie Cornuet et al.   BIOINFORMATICS

The role of the uplift of the Qinghai-Tibetan Plateau for the evolution of Tibetan biotas

(2014) Adrien Favre et al.   BIOLOGICAL REVIEWS

Distributional dynamics and interspecific gene flow inPicea likiangensisandP. wilsoniitriggered by climate change on the Qinghai-Tibet Plateau

(2014) Yongshuai Sun et al.   JOURNAL OF BIOGEOGRAPHY

Pliocene intraspecific divergence and Plio-Pleistocene range expansions withinPicea likiangensis(Lijiang spruce), a dominant forest tree of the Qinghai-Tibet Plateau

(2014) Long Li et al.   MOLECULAR ECOLOGY

Genomics of the divergence continuum in an African plant biodiversity hotspot, I: drivers of population divergence inRestio capensis(Restionaceae)

(2014) C. Lexer et al.   MOLECULAR ECOLOGY

Restriction site-associated DNA sequencing, genotyping error estimation andde novoassembly optimization for population genetic inference

(2014) A. Mastretta-Yanes et al.   Molecular Ecology Resources

Evolutionary history and underlying adaptation of alpine plants on the Qinghai-Tibet Plateau

(2014) Jian-Quan LIU et al.   Journal of Systematics and Evolution

Evolutionary diversifications of plants on the Qinghai-Tibetan Plateau

(2014) Jun Wen et al.   Frontiers in Genetics

Stacks: an analysis tool set for population genomics

(2013) Julian Catchen et al.   MOLECULAR ECOLOGY

Phylogenetic and biogeographic analyses of the Sino-Himalayan endemic genus Cyananthus (Campanulaceae) and implications for the evolution of its sexual system

(2013) Zhuo Zhou et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Geological and ecological factors drive cryptic speciation of yews in a biodiversity hotspot

(2013) Jie Liu et al.   NEW PHYTOLOGIST

Collinearity: a review of methods to deal with it and a simulation study evaluating their performance

(2012) Carsten F. Dormann et al.   ECOGRAPHY

Quantifying the roles of ecology and geography in spatial genetic divergence

(2012) Ian J. Wang et al.   ECOLOGY LETTERS

Special features of RAD Sequencing data: implications for genotyping

(2012) John W. Davey et al.   MOLECULAR ECOLOGY

Out of the Qinghai-Tibet Plateau: evidence for the origin and dispersal of Eurasian temperate plants from a phylogeographic study of Hippophaë rhamnoides (Elaeagnaceae)

(2012) Dong-Rui Jia et al.   NEW PHYTOLOGIST

Do Stacked Species Distribution Models Reflect Altitudinal Diversity Patterns?

(2012) Rubén G. Mateo et al.   PLoS One

Double Digest RADseq: An Inexpensive Method for De Novo SNP Discovery and Genotyping in Model and Non-Model Species

(2012) Brant K. Peterson et al.   PLoS One

Population Expanding with the Phalanx Model and Lineages Split by Environmental Heterogeneity: A Case Study of Primula obconica in Subtropical China

(2012) Hai-Fei Yan et al.   PLoS One

Integrating species distribution models (SDMs) and phylogeography for two species of AlpinePrimula

(2012) G. Schorr et al.   Ecology and Evolution

A Quantitative Comparison of the Similarity between Genes and Geography in Worldwide Human Populations

(2012) Chaolong Wang et al.   PLoS Genetics

Next-generation RAD sequencing identifies thousands of SNPs for assessing hybridization between rainbow and westslope cutthroat trout

(2011) PAUL A. HOHENLOHE et al.   Molecular Ecology Resources

Plant molecular phylogeography in China and adjacent regions: Tracing the genetic imprints of Quaternary climate and environmental change in the world’s most diverse temperate flora

(2011) Ying-Xiong Qiu et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Genome-wide genetic marker discovery and genotyping using next-generation sequencing

(2011) John W. Davey et al.   NATURE REVIEWS GENETICS

STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method

(2011) Dent A. Earl et al.   Conservation Genetics Resources

Stacks : Building and Genotyping Loci De Novo From Short-Read Sequences

(2011) Julian M. Catchen et al.   G3-Genes Genomes Genetics

Evolutionary history of an alpine shrub Hippophae tibetana (Elaeagnaceae): allopatric divergence and regional expansion

(2010) DONG-RUI JIA et al.   BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Inference on population history and model checking using DNA sequence and microsatellite data with the software DIYABC (v1.0)

(2010) Jean-Marie Cornuet et al.   BMC BIOINFORMATICS

High Genetic Differentiation Among French Populations of the Orsini’s Viper (Vipera ursinii ursinii) Based on Mitochondrial and Microsatellite Data: Implications for Conservation Management

(2010) Anne-Laure Ferchaud et al.   JOURNAL OF HEREDITY

Phylogeographic structure of Hippophae tibetana (Elaeagnaceae) highlights the highest microrefugia and the rapid uplift of the Qinghai-Tibetan Plateau

(2010) HAO WANG et al.   MOLECULAR ECOLOGY

Resolving postglacial phylogeography using high-throughput sequencing

(2010) K. J. Emerson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Amazonia Through Time: Andean Uplift, Climate Change, Landscape Evolution, and Biodiversity

(2010) C. Hoorn et al.   SCIENCE

Comparing Spatial Maps of Human Population-Genetic Variation Using Procrustes Analysis

(2010) Chaolong Wang et al.   Statistical Applications in Genetics and Molecular Biology

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

BIOMOD - a platform for ensemble forecasting of species distributions

(2009) Wilfried Thuiller et al.   ECOGRAPHY

Range shifts of Potentilla fruticosa on the Qinghai-Tibetan Plateau during glacial and interglacial periods revealed by chloroplast DNA sequence variation

(2009) A Shimono et al.   HEREDITY

History and evolution of alpine plants endemic to the Qinghai-Tibetan Plateau:Aconitum gymnandrum(Ranunculaceae)

(2009) LIUYANG WANG et al.   MOLECULAR ECOLOGY

Genetics in geographically structured populations: defining, estimating and interpreting FST

(2009) Kent E. Holsinger et al.   NATURE REVIEWS GENETICS

Tree endurance on the Tibetan Plateau marks the world’s highest known tree line of the Last Glacial Maximum

(2009) Lars Opgenoorth et al.   NEW PHYTOLOGIST

adegenet: a R package for the multivariate analysis of genetic markers

(2008) Thibaut Jombart   BIOINFORMATICS

Extensive population expansion ofPedicularis longiflora(Orobanchaceae) on the Qinghai-Tibetan Plateau and its correlation with the Quaternary climate change

(2008) FU-SHENG YANG et al.   MOLECULAR ECOLOGY

The relative importance of ecology and geographic isolation for speciation in anoles

(2008) R. S Thorpe et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Latest Pleistocene and Holocene glacier fluctuations in the Himalaya and Tibet

(2008) Lewis A. Owen   QUATERNARY SCIENCE REVIEWS