Comparative metabolomic analysis reveals a reactive oxygen species-dominated dynamic model underlying chilling environment adaptation and tolerance in rice

COLD1 Confers Chilling Tolerance in Rice

(2015) Yun Ma et al.   CELL

Cold responsive gene transcription becomes more complex

(2015) Chunzhao Zhao et al.   TRENDS IN PLANT SCIENCE

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

Proteomic changes in the roots of germinating Phaseolus vulgaris seeds in response to chilling stress and post-stress recovery

(2014) Anna Badowiec et al.   JOURNAL OF PLANT PHYSIOLOGY

Roles of lipids as signaling molecules and mitigators during stress response in plants

(2014) Yozo Okazaki et al.   PLANT JOURNAL

Integrated Analysis of the Effects of Cold and Dehydration on Rice Metabolites, Phytohormones, and Gene Transcripts

(2014) K. Maruyama et al.   PLANT PHYSIOLOGY

EARLY BUD-BREAK 1 (EBB1) is a regulator of release from seasonal dormancy in poplar trees

(2014) Yordan S. Yordanov et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Regulation of water, salinity, and cold stress responses by salicylic acid

(2014) Kenji Miura et al.   Frontiers in Plant Science

Ethylene, a key factor in the regulation of seed dormancy

(2014) Françoise Corbineau et al.   Frontiers in Plant Science

Cold Signaling and Cold Response in Plants

(2013) Kenji Miura et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

ROS as key players in plant stress signalling

(2013) A. Baxter et al.   JOURNAL OF EXPERIMENTAL BOTANY

Characterization and Ectopic Expression of a Populus Hydroxyacid Hydroxycinnamoyltransferase

(2013) Ai-Xia Cheng et al.   Molecular Plant

The purine metabolite allantoin enhances abiotic stress tolerance through synergistic activation of abscisic acid metabolism

(2013) SHUNSUKE WATANABE et al.   PLANT CELL AND ENVIRONMENT

Polyamines reprogram oxidative and nitrosative status and the proteome of citrus plants exposed to salinity stress

(2013) GEORGIA TANOU et al.   PLANT CELL AND ENVIRONMENT

Changes in the protein patterns in pea (Pisum sativum L.) roots under the influence of long- and short-term chilling stress and post-stress recovery

(2013) Anna Badowiec et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Impacts of acute ozone stress on superoxide dismutase (SOD) expression and reactive oxygen species (ROS) formation in rice leaves

(2013) Yoshiaki Ueda et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Metabolomics of cereals under biotic stress: current knowledge and techniques

(2013) Dirk Balmer et al.   Frontiers in Plant Science

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

(2013) Daehwan Kim et al.   GENOME BIOLOGY

Neisseria meningitidisandNeisseria gonorrhoeaeare differently adapted in the regulation of denitrification: single nucleotide polymorphisms that enable species-specific tuning of the aerobic–anaerobic switch

(2012) James Edwards et al.   BIOCHEMICAL JOURNAL

Highly sensitive and quantitative profiling of acidic phytohormones using derivatization approach coupled with nano-LC–ESI-Q-TOF-MS analysis

(2012) Ming-Luan Chen et al.   JOURNAL OF CHROMATOGRAPHY B-ANALYTICAL TECHNOLOGIES IN THE BIOMEDICAL AND LIFE SCIENCES

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Low-temperature perception leading to gene expression and cold tolerance in higher plants

(2012) Marc R. Knight et al.   NEW PHYTOLOGIST

A NAC transcription factor NTL4 promotes reactive oxygen species production during drought-induced leaf senescence in Arabidopsis

(2012) Sangmin Lee et al.   PLANT JOURNAL

Genome-Wide Transcriptional Profiles during Temperature and Oxidative Stress Reveal Coordinated Expression Patterns and Overlapping Regulons in Rice

(2012) Dheeraj Mittal et al.   PLoS One

Colinearity and Similar Expression Pattern of Rice DREB1s Reveal Their Functional Conservation in the Cold-Responsive Pathway

(2012) Donghai Mao et al.   PLoS One

NMNAT Expression and its Relation to NAD Metabolism

(2011) H. N. Jayaram et al.   CURRENT MEDICINAL CHEMISTRY

Chemistry and biology of reactive oxygen species in signaling or stress responses

(2011) Bryan C Dickinson et al.   Nature Chemical Biology

KOBAS 2.0: a web server for annotation and identification of enriched pathways and diseases

(2011) Chen Xie et al.   NUCLEIC ACIDS RESEARCH

A Sister Group Contrast Using Untargeted Global Metabolomic Analysis Delineates the Biochemical Regulation Underlying Desiccation Tolerance inSporobolus stapfianus

(2011) Melvin J. Oliver et al.   PLANT CELL

Is there an important role for reactive oxygen species and redox regulation during floral senescence?

(2011) HILARY J. ROGERS   PLANT CELL AND ENVIRONMENT

Glutathione in plants: an integrated overview

(2011) GRAHAM NOCTOR et al.   PLANT CELL AND ENVIRONMENT

Methanol is an endogenous elicitor molecule for the synthesis of tryptophan and tryptophan-derived secondary metabolites upon senescence of detached rice leaves

(2011) Kiyoon Kang et al.   PLANT JOURNAL

High-density kinetic analysis of the metabolomic and transcriptomic response of Arabidopsis to eight environmental conditions

(2011) Camila Caldana et al.   PLANT JOURNAL

Differential Molecular Responses of Rice and Wheat Coleoptiles to Anoxia Reveal Novel Metabolic Adaptations in Amino Acid Metabolism for Tissue Tolerance

(2011) R. N. Shingaki-Wells et al.   PLANT PHYSIOLOGY

Direct Infusion Mass Spectrometry of Oxylipin-Containing Arabidopsis Membrane Lipids Reveals Varied Patterns in Different Stress Responses

(2011) H. S. Vu et al.   PLANT PHYSIOLOGY

Transcriptional regulatory network triggered by oxidative signals configures the early response mechanisms of japonica rice to chilling stress

(2010) Kil-Young Yun et al.   BMC PLANT BIOLOGY

CBF-dependent signaling pathway: A key responder to low temperature stress in plants

(2010) M.Q. Zhou et al.   CRITICAL REVIEWS IN BIOTECHNOLOGY

agriGO: a GO analysis toolkit for the agricultural community

(2010) Zhou Du et al.   NUCLEIC ACIDS RESEARCH

Integrated, Nontargeted Ultrahigh Performance Liquid Chromatography/Electrospray Ionization Tandem Mass Spectrometry Platform for the Identification and Relative Quantification of the Small-Molecule Complement of Biological Systems

(2009) Anne M. Evans et al.   ANALYTICAL CHEMISTRY

The role of NAD biosynthesis in plant development and stress responses

(2009) Shin-nosuke Hashida et al.   ANNALS OF BOTANY

Fatty Acid–Derived Signals in Plant Defense

(2009) Aardra Kachroo et al.   Annual Review of Phytopathology

Senescence-Induced Serotonin Biosynthesis and Its Role in Delaying Senescence in Rice Leaves

(2009) K. Kang et al.   PLANT PHYSIOLOGY

Fatty acid unsaturation, mobilization, and regulation in the response of plants to stress

(2008) Robert G. Upchurch   BIOTECHNOLOGY LETTERS

Glutathione S-Transferase P1: Gene Sequence Variation and Functional Genomic Studies

(2008) A. M. Moyer et al.   CANCER RESEARCH

A  -Glutamyl Transpeptidase-Independent Pathway of Glutathione Catabolism to Glutamate via 5-Oxoproline in Arabidopsis

(2008) N. Ohkama-Ohtsu et al.   PLANT PHYSIOLOGY

Putrescine Is Involved in Arabidopsis Freezing Tolerance and Cold Acclimation by Regulating Abscisic Acid Levels in Response to Low Temperature

(2008) J. C. Cuevas et al.   PLANT PHYSIOLOGY