Competing endogenous RNAs: a target-centric view of small RNA regulation in bacteria

Expression of IroN, the salmochelin siderophore receptor, requires mRNA activation by RyhB small RNA homologues

(2016) Roberto Balbontín et al.   MOLECULAR MICROBIOLOGY

sRNA roles in regulating transcriptional regulators: Lrp and SoxS regulation by sRNAs

(2016) Hyun-Jung Lee et al.   NUCLEIC ACIDS RESEARCH

Cross talk between ABC transporter mRNAs via a target mRNA-derived sponge of the GcvB small RNA

(2015) M. Miyakoshi et al.   EMBO JOURNAL

Regulation of Bacterial Virulence by Csr (Rsm) Systems

(2015) Christopher A. Vakulskas et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

A 3′ External Transcribed Spacer in a tRNA Transcript Acts as a Sponge for Small RNAs to Prevent Transcriptional Noise

(2015) David Lalaouna et al.   MOLECULAR CELL

Small RNA-based feedforward loop with AND-gate logic regulates extrachromosomal DNA transfer inSalmonella

(2015) Kai Papenfort et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

RNA-Based Regulation: Dynamics and Response to Perturbations of Competing RNAs

(2014) Matteo Figliuzzi et al.   BIOPHYSICAL JOURNAL

The Crc and Hfq proteins ofPseudomonas putidacooperate in catabolite repression and formation of ribonucleic acid complexes with specific target motifs

(2014) Renata Moreno et al.   ENVIRONMENTAL MICROBIOLOGY

RNA remodeling by bacterial global regulator CsrA promotes Rho-dependent transcription termination

(2014) N. Figueroa-Bossi et al.   GENES & DEVELOPMENT

Identification of Bacteriophage-Encoded Anti-sRNAs in Pathogenic Escherichia coli

(2014) Jai J. Tree et al.   MOLECULAR CELL

Assessing the ceRNA Hypothesis with Quantitative Measurements of miRNA and Target Abundance

(2014) Rémy Denzler et al.   MOLECULAR CELL

Interplay of transcriptional and small RNA-dependent control mechanisms regulates chitosugar uptake inEscherichia coliandSalmonella

(2014) Jacqueline Plumbridge et al.   MOLECULAR MICROBIOLOGY

Competition between target sites of regulators shapes post-transcriptional gene regulation

(2014) Marvin Jens et al.   NATURE REVIEWS GENETICS

Regulation of Hfq by the RNA CrcZ in Pseudomonas aeruginosa Carbon Catabolite Repression

(2014) Elisabeth Sonnleitner et al.   PLoS Genetics

Small RNA functions in carbon metabolism and virulence of enteric pathogens

(2014) Kai Papenfort et al.   Frontiers in Cellular and Infection Microbiology

Expanding control in bacteria: interplay between small RNAs and transcriptional regulators to control gene expression

(2013) Pierre Mandin et al.   CURRENT OPINION IN MICROBIOLOGY

Antagonistic functions between the RNA chaperone Hfq and an sRNA regulate sensitivity to the antibiotic colicin

(2013) Hubert Salvail et al.   EMBO JOURNAL

A novel CsrA titration mechanism regulates fimbrial gene expression in Salmonella typhimurium

(2013) Torsten Sterzenbach et al.   EMBO JOURNAL

A small RNA activates CFA synthase by isoform-specific mRNA stabilization

(2013) Kathrin Sophie Fröhlich et al.   EMBO JOURNAL

Dual function of the McaS small RNA in controlling biofilm formation

(2013) M. G. Jorgensen et al.   GENES & DEVELOPMENT

Targeted decay of a regulatory small RNA by an adaptor protein for RNase E and counteraction by an anti-adaptor RNA

(2013) Y. Gopel et al.   GENES & DEVELOPMENT

Small Regulatory RNAs in the Control of Motility and Biofilm Formation in E. coli and Salmonella

(2013) Franziska Mika et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Emerging Roles of Competing Endogenous RNAs in Cancer: Insights from the Regulation of PTEN

(2013) A. de Giorgio et al.   MOLECULAR AND CELLULAR BIOLOGY

Modelling Competing Endogenous RNA Networks

(2013) Carla Bosia et al.   PLoS One

Integrated transcriptional and competitive endogenous RNA networks are cross-regulated in permissive molecular environments

(2013) U. Ala et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Post-Transcriptional Control of the Escherichia coli PhoQ-PhoP Two-Component System by Multiple sRNAs Involves a Novel Pairing Region of GcvB

(2013) Audrey Coornaert et al.   PLoS Genetics

Lack of interchangeability of Hfq-like proteins

(2012) Tatiana Rochat et al.   BIOCHIMIE

Noncanonical repression of translation initiation through small RNA recruitment of the RNA chaperone Hfq

(2012) G. Desnoyers et al.   GENES & DEVELOPMENT

A role for Rho-dependent polarity in gene regulation by a noncoding small RNA

(2012) L. Bossi et al.   GENES & DEVELOPMENT

Targeting of csgD by the small regulatory RNA RprA links stationary phase, biofilm formation and cell envelope stress in Escherichia coli

(2012) Franziska Mika et al.   MOLECULAR MICROBIOLOGY

The csgD mRNA as a hub for signal integration via multiple small RNAs

(2012) Alex Boehm et al.   MOLECULAR MICROBIOLOGY

A small RNA that regulates motility and biofilm formation in response to changes in nutrient availability in Escherichia coli

(2012) Maureen K. Thomason et al.   MOLECULAR MICROBIOLOGY

Hfq proximity and orientation controls RNA annealing

(2012) Subrata Panja et al.   NUCLEIC ACIDS RESEARCH

Small RNA biology is systems biology

(2011) Daniel Jost et al.   BMB Reports

A ceRNA Hypothesis: The Rosetta Stone of a Hidden RNA Language?

(2011) Leonardo Salmena et al.   CELL

Regulation by Small RNAs in Bacteria: Expanding Frontiers

(2011) Gisela Storz et al.   MOLECULAR CELL

Competition among Hfq-binding small RNAs in Escherichia coli

(2011) Kyung Moon et al.   MOLECULAR MICROBIOLOGY

Pervasive post-transcriptional control of genes involved in amino acid metabolism by the Hfq-dependent GcvB small RNA

(2011) Cynthia M. Sharma et al.   MOLECULAR MICROBIOLOGY

Hfq and its constellation of RNA

(2011) Jörg Vogel et al.   NATURE REVIEWS MICROBIOLOGY

Rapid binding and release of Hfq from ternary complexes during RNA annealing

(2011) Julia F. Hopkins et al.   NUCLEIC ACIDS RESEARCH

The Staphylococcus aureus RNome and Its Commitment to Virulence

(2011) Brice Felden et al.   PLoS Pathogens

Emerging Roles for Natural MicroRNA Sponges

(2010) Margaret S. Ebert et al.   CURRENT BIOLOGY

Integrating anaerobic/aerobic sensing and the general stress response through the ArcZ small RNA

(2010) Pierre Mandin et al.   EMBO JOURNAL

RNAs actively cycle on the Sm-like protein Hfq

(2010) A. Fender et al.   GENES & DEVELOPMENT

Hfq Is a Global Regulator That Controls the Pathogenicity of Staphylococcus aureus

(2010) Yu Liu et al.   PLoS One

Disruption of small RNA signaling caused by competition for Hfq

(2010) R. Hussein et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Bacterial Small RNA Regulators: Versatile Roles and Rapidly Evolving Variations

(2010) S. Gottesman et al.   Cold Spring Harbor Perspectives in Biology

MicroRNAs: Target Recognition and Regulatory Functions

(2009) David P. Bartel   CELL

Redefining MicroRNA Targets

(2009) Hervé Seitz   CURRENT BIOLOGY

Caught at its own game: regulatory small RNA inactivated by an inducible transcript mimicking its target

(2009) N. Figueroa-Bossi et al.   GENES & DEVELOPMENT

Switching off small RNA regulation with trap-mRNA

(2009) Martin Overgaard et al.   MOLECULAR MICROBIOLOGY

Small RNA as global regulator of carbon catabolite repression in Pseudomonas aeruginosa

(2009) E. Sonnleitner et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The small RNA GlmY acts upstream of the sRNA GlmZ in the activation of glmS expression and is subject to regulation by polyadenylation in Escherichia coli

(2008) Birte Reichenbach et al.   NUCLEIC ACIDS RESEARCH

Two Seemingly Homologous Noncoding RNAs Act Hierarchically to Activate glmS mRNA Translation

(2008) Johannes H Urban et al.   PLOS BIOLOGY