标题
Genetic sources of population epigenomic variation
作者
关键词
-
出版物
NATURE REVIEWS GENETICS
Volume 17, Issue 6, Pages 319-332
出版商
Springer Nature
发表日期
2016-05-09
DOI
10.1038/nrg.2016.45
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Genetic Control of Chromatin States in Humans Involves Local and Distal Chromosomal Interactions
- (2015) Fabian Grubert et al. CELL
- Population Variation and Genetic Control of Modular Chromatin Architecture in Humans
- (2015) Sebastian M. Waszak et al. CELL
- Analysis pipelines and packages for Infinium HumanMethylation450 BeadChip (450k) data
- (2015) Tiffany J. Morris et al. METHODS
- Epigenetic mutations can both help and hinder adaptive evolution
- (2015) Ilkka Kronholm et al. MOLECULAR ECOLOGY
- Chromatin architecture reorganization during stem cell differentiation
- (2015) Jesse R. Dixon et al. NATURE
- Integrative analysis of 111 reference human epigenomes
- (2015) Anshul Kundaje et al. NATURE
- Integrative analysis of haplotype-resolved epigenomes across human tissues
- (2015) Danny Leung et al. NATURE
- Competition between DNA methylation and transcription factors determines binding of NRF1
- (2015) Silvia Domcke et al. NATURE
- Single-cell epigenomics: techniques and emerging applications
- (2015) Omer Schwartzman et al. NATURE REVIEWS GENETICS
- DNA methylation pathways and their crosstalk with histone methylation
- (2015) Jiamu Du et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- Chromatin state analysis of the barley epigenome reveals a higher-order structure defined by H3K27me1 and H3K27me3 abundance
- (2015) Katie Baker et al. PLANT JOURNAL
- Rate, spectrum, and evolutionary dynamics of spontaneous epimutations
- (2015) Adriaan van der Graaf et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Arabidopsis MSH1 mutation alters the epigenome and produces heritable changes in plant growth
- (2015) Kamaldeep S. Virdi et al. Nature Communications
- Century-scale Methylome Stability in a Recently Diverged Arabidopsis thaliana Lineage
- (2015) Jörg Hagmann et al. PLoS Genetics
- DNA methylation in Arabidopsis has a genetic basis and shows evidence of local adaptation
- (2015) Manu J Dubin et al. eLife
- Global DNA cytosine methylation as an evolving trait: phylogenetic signal and correlated evolution with genome size in angiosperms
- (2015) Conchita Alonso et al. Frontiers in Genetics
- pENCODE: A Plant Encyclopedia of DNA Elements
- (2014) Amanda K. Lane et al. Annual Review of Genetics
- The Contributions of Transposable Elements to the Structure, Function, and Evolution of Plant Genomes
- (2014) Jeffrey L. Bennetzen et al. Annual Review of Plant Biology
- Promoter or enhancer, what's the difference? Deconstruction of established distinctions and presentation of a unifying model
- (2014) Robin Andersson BIOESSAYS
- Purifying Selection, Drift, and Reversible Mutation with Arbitrarily High Mutation Rates
- (2014) Brian Charlesworth et al. GENETICS
- A Neutrality Test for Detecting Selection on DNA Methylation Using Single Methylation Polymorphism Frequency Spectrum
- (2014) Jun Wang et al. Genome Biology and Evolution
- Natural variation of histone modification and its impact on gene expression in the rat genome
- (2014) C. Rintisch et al. GENOME RESEARCH
- Environmentally responsive genome-wide accumulation of de novoArabidopsis thalianamutations and epimutations
- (2014) Caifu Jiang et al. GENOME RESEARCH
- Linking the genetic architecture of cytosine modifications with human complex traits
- (2014) Xu Zhang et al. HUMAN MOLECULAR GENETICS
- Heritability and genomics of gene expression in peripheral blood
- (2014) Fred A Wright et al. NATURE GENETICS
- The Functional Topography of the Arabidopsis Genome Is Organized in a Reduced Number of Linear Motifs of Chromatin States
- (2014) J. Sequeira-Mendes et al. PLANT CELL
- Genetic Perturbation of the Maize Methylome
- (2014) Qing Li et al. PLANT CELL
- Epigenetic Inheritance, Epimutation, and the Response to Selection
- (2014) Robert E. Furrow PLoS One
- Mapping the Epigenetic Basis of Complex Traits
- (2014) S. Cortijo et al. SCIENCE
- Genome-Wide Associations between Genetic and Epigenetic Variation Influence mRNA Expression and Insulin Secretion in Human Pancreatic Islets
- (2014) Anders H. Olsson et al. PLoS Genetics
- Methylation QTLs Are Associated with Coordinated Changes in Transcription Factor Binding, Histone Modifications, and Gene Expression Levels
- (2014) Nicholas E. Banovich et al. PLoS Genetics
- Evolution of DNA Methylation Patterns in the Brassicaceae is Driven by Differences in Genome Organization
- (2014) Danelle K. Seymour et al. PLoS Genetics
- Natural CMT2 Variation Is Associated With Genome-Wide Methylation Changes and Temperature Seasonality
- (2014) Xia Shen et al. PLoS Genetics
- Contribution of genetic variation to transgenerational inheritance of DNA methylation
- (2014) Allan F McRae et al. GENOME BIOLOGY
- The relationship between DNA methylation, genetic and expression inter-individual variation in untransformed human fibroblasts
- (2014) James R Wagner et al. GENOME BIOLOGY
- How epigenetic mutations can affect genetic evolution: Model and mechanism
- (2013) Filippos D. Klironomos et al. BIOESSAYS
- An integrative approach to understanding the combinatorial histone code at functional elements
- (2013) William K. M. Lai et al. BIOINFORMATICS
- Transcriptional and Epigenetic Dynamics during Specification of Human Embryonic Stem Cells
- (2013) Casey A. Gifford et al. CELL
- Comprehensive Analysis of Silencing Mutants Reveals Complex Regulation of the Arabidopsis Methylome
- (2013) Hume Stroud et al. CELL
- GENETIC VARIATION AND THE EVOLUTION OF EPIGENETIC REGULATION
- (2013) Robert E. Furrow et al. EVOLUTION
- Inheritance Patterns and Stability of DNA Methylation Variation in Maize Near-Isogenic Lines
- (2013) Q. Li et al. GENETICS
- Genome-Wide Variation of Cytosine Modifications Between European and African Populations and the Implications for Complex Traits
- (2013) Erika L. Moen et al. GENETICS
- The maize methylome influences mRNA splice sites and reveals widespread paramutation-like switches guided by small RNA
- (2013) M. Regulski et al. GENOME RESEARCH
- Epigenome-wide inheritance of cytosine methylation variants in a recombinant inbred population
- (2013) R. J. Schmitz et al. GENOME RESEARCH
- Histone modifications for human epigenome analysis
- (2013) Hiroshi Kimura JOURNAL OF HUMAN GENETICS
- Patterns of population epigenomic diversity
- (2013) Robert J. Schmitz et al. NATURE
- Charting a dynamic DNA methylation landscape of the human genome
- (2013) Michael J. Ziller et al. NATURE
- Massive genomic variation and strong selection in Arabidopsis thaliana lines from Sweden
- (2013) Quan Long et al. NATURE GENETICS
- Recommendations for the design and analysis of epigenome-wide association studies
- (2013) Karin B Michels et al. NATURE METHODS
- DNA methylation: roles in mammalian development
- (2013) Zachary D. Smith et al. NATURE REVIEWS GENETICS
- From promises to practical strategies in epigenetic epidemiology
- (2013) Jonathan Mill et al. NATURE REVIEWS GENETICS
- Comparative annotation of functional regions in the human genome using epigenomic data
- (2013) Kyoung-Jae Won et al. NUCLEIC ACIDS RESEARCH
- Epigenetic and Genetic Influences on DNA Methylation Variation in Maize Populations
- (2013) S. R. Eichten et al. PLANT CELL
- Gene body methylation is conserved between plant orthologs and is of evolutionary consequence
- (2013) S. Takuno et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Extensive Variation in Chromatin States Across Humans
- (2013) M. Kasowski et al. SCIENCE
- Coordinated Effects of Sequence Variation on DNA Binding, Chromatin Structure, and Transcription
- (2013) H. Kilpinen et al. SCIENCE
- Identification of Genetic Variants That Affect Histone Modifications in Human Cells
- (2013) G. McVicker et al. SCIENCE
- Hidden genetic nature of epigenetic natural variation in plants
- (2013) Ales Pecinka et al. TRENDS IN PLANT SCIENCE
- Regulation of the Boundaries of Accessible Chromatin
- (2013) Xiaoran Chai et al. PLoS Genetics
- Genetic Landscape of Open Chromatin in Yeast
- (2013) Kibaick Lee et al. PLoS Genetics
- Passive and active DNA methylation and the interplay with genetic variation in gene regulation
- (2013) Maria Gutierrez-Arcelus et al. eLife
- jMOSAiCS: joint analysis of multiple ChIP-seq datasets
- (2013) Xin Zeng et al. GENOME BIOLOGY
- Genetic analysis of DNA methylation and gene expression levels in whole blood of healthy human subjects
- (2012) Kristel R van Eijk et al. BMC GENOMICS
- A Hypomethylated population of Brassica rapa for forward and reverse Epi-genetics
- (2012) Stephen Amoah et al. BMC PLANT BIOLOGY
- Epigenetic variation: origin and transgenerational inheritance
- (2012) Claude Becker et al. CURRENT OPINION IN PLANT BIOLOGY
- Neonatal DNA methylation profile in human twins is specified by a complex interplay between intrauterine environmental and genetic factors, subject to tissue-specific influence
- (2012) L. Gordon et al. GENOME RESEARCH
- Molecular Mechanisms of Epigenetic Variation in Plants
- (2012) Ryo Fujimoto et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
- DNase I sensitivity QTLs are a major determinant of human expression variation
- (2012) Jacob F. Degner et al. NATURE
- BLUEPRINT to decode the epigenetic signature written in blood
- (2012) David Adams et al. NATURE BIOTECHNOLOGY
- Unsupervised pattern discovery in human chromatin structure through genomic segmentation
- (2012) Michael M Hoffman et al. NATURE METHODS
- Epigenetic variation creates potential for evolution of plant phenotypic plasticity
- (2012) Yuan-Ye Zhang et al. NEW PHYTOLOGIST
- Genome-Wide Analysis of DNA Methylation and Gene Expression Changes in Two Arabidopsis Ecotypes and Their Reciprocal Hybrids
- (2012) H. Shen et al. PLANT CELL
- Integrative analysis of chromatin states in Arabidopsis identified potential regulatory mechanisms for natural antisense transcript production
- (2012) Chongyuan Luo et al. PLANT JOURNAL
- Epigenetic and epigenomic variation in Arabidopsis thaliana
- (2012) Robert J. Schmitz et al. TRENDS IN PLANT SCIENCE
- Epigenome-Wide Scans Identify Differentially Methylated Regions for Age and Age-Related Phenotypes in a Healthy Ageing Population
- (2012) Jordana T. Bell et al. PLoS Genetics
- Population-specificity of human DNA methylation
- (2012) Hunter B Fraser et al. GENOME BIOLOGY
- A Unified Approach to the Evolutionary Consequences of Genetic and Nongenetic Inheritance
- (2011) Troy Day et al. AMERICAN NATURALIST
- Integrative epigenomic mapping defines four main chromatin states in Arabidopsis
- (2011) François Roudier et al. EMBO JOURNAL
- Quantitative Epigenetics Through Epigenomic Perturbation of Isogenic Lines
- (2011) Frank Johannes et al. GENETICS
- Genome-Wide Epigenetic Perturbation Jump-Starts Patterns of Heritable Variation Found in Nature
- (2011) Fabrice Roux et al. GENETICS
- Body-Methylated Genes in Arabidopsis thaliana Are Functionally Important and Evolve Slowly
- (2011) S. Takuno et al. MOLECULAR BIOLOGY AND EVOLUTION
- Spontaneous epigenetic variation in the Arabidopsis thaliana methylome
- (2011) Claude Becker et al. NATURE
- Epigenome-wide association studies for common human diseases
- (2011) Vardhman K. Rakyan et al. NATURE REVIEWS GENETICS
- Transgenerational Epigenetic Instability Is a Source of Novel Methylation Variants
- (2011) R. J. Schmitz et al. SCIENCE
- Population-epigenetic models of selection
- (2011) Jemma L. Geoghegan et al. THEORETICAL POPULATION BIOLOGY
- Evaluation of the Infinium Methylation 450K technology
- (2011) Sarah Dedeurwaerder et al. Epigenomics
- Heritable Epigenetic Variation among Maize Inbreds
- (2011) Steve R. Eichten et al. PLoS Genetics
- DNA methylation patterns associate with genetic and gene expression variation in HapMap cell lines
- (2011) Jordana T Bell et al. GENOME BIOLOGY
- Genetic Control of Individual Differences in Gene-Specific Methylation in Human Brain
- (2010) Dandan Zhang et al. AMERICAN JOURNAL OF HUMAN GENETICS
- Systematic Protein Location Mapping Reveals Five Principal Chromatin Types in Drosophila Cells
- (2010) Guillaume J. Filion et al. CELL
- Experimental alteration of DNA methylation affects the phenotypic plasticity of ecologically relevant traits in Arabidopsis thaliana
- (2010) Oliver Bossdorf et al. EVOLUTIONARY ECOLOGY
- Allele-specific methylation is prevalent and is contributed by CpG-SNPs in the human genome
- (2010) R. Shoemaker et al. GENOME RESEARCH
- Plasticity in patterns of histone modifications and chromosomal proteins in Drosophila heterochromatin
- (2010) N. C. Riddle et al. GENOME RESEARCH
- Broad chromosomal domains of histone modification patterns in C. elegans
- (2010) T. Liu et al. GENOME RESEARCH
- Comprehensive analysis of the chromatin landscape in Drosophila melanogaster
- (2010) Peter V. Kharchenko et al. NATURE
- Discovery and characterization of chromatin states for systematic annotation of the human genome
- (2010) Jason Ernst et al. NATURE BIOTECHNOLOGY
- The NIH Roadmap Epigenomics Mapping Consortium
- (2010) Bradley E Bernstein et al. NATURE BIOTECHNOLOGY
- Charting histone modifications and the functional organization of mammalian genomes
- (2010) Vicky W. Zhou et al. NATURE REVIEWS GENETICS
- Establishing, maintaining and modifying DNA methylation patterns in plants and animals
- (2010) Julie A. Law et al. NATURE REVIEWS GENETICS
- Principles and challenges of genome-wide DNA methylation analysis
- (2010) Peter W. Laird NATURE REVIEWS GENETICS
- Conservation and divergence of methylation patterning in plants and animals
- (2010) S. Feng et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The Rate and Molecular Spectrum of Spontaneous Mutations in Arabidopsis thaliana
- (2010) S. Ossowski et al. SCIENCE
- Heritable Individual-Specific and Allele-Specific Chromatin Signatures in Humans
- (2010) R. McDaniell et al. SCIENCE
- Identification of Functional Elements and Regulatory Circuits by Drosophila modENCODE
- (2010) et al. SCIENCE
- Integrative Analysis of the Caenorhabditis elegans Genome by the modENCODE Project
- (2010) M. B. Gerstein et al. SCIENCE
- Genome-Wide Evolutionary Analysis of Eukaryotic DNA Methylation
- (2010) A. Zemach et al. SCIENCE
- Abundant Quantitative Trait Loci Exist for DNA Methylation and Gene Expression in Human Brain
- (2010) J. Raphael Gibbs et al. PLoS Genetics
- Compromised stability of DNA methylation and transposon immobilization in mosaic Arabidopsis epigenomes
- (2009) J. Reinders et al. GENES & DEVELOPMENT
- Epigenetic Inheritance and the Missing Heritability Problem
- (2009) M. Slatkin GENETICS
- Epigenetic silencing of transposable elements: A trade-off between reduced transposition and deleterious effects on neighboring gene expression
- (2009) J. D. Hollister et al. GENOME RESEARCH
- Linking DNA methylation and histone modification: patterns and paradigms
- (2009) Howard Cedar et al. NATURE REVIEWS GENETICS
- ChIP–seq: advantages and challenges of a maturing technology
- (2009) Peter J. Park NATURE REVIEWS GENETICS
- Stress-induced DNA methylation changes and their heritability in asexual dandelions
- (2009) Koen J. F. Verhoeven et al. NEW PHYTOLOGIST
- Energy use efficiency is characterized by an epigenetic component that can be directed through artificial selection to increase yield
- (2009) M. Hauben et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Discovery and Annotation of Functional Chromatin Signatures in the Human Genome
- (2009) Gary Hon et al. PLoS Computational Biology
- Assessing the Impact of Transgenerational Epigenetic Variation on Complex Traits
- (2009) Frank Johannes et al. PLoS Genetics
- Histone H2A.Z and DNA methylation are mutually antagonistic chromatin marks
- (2008) Daniel Zilberman et al. NATURE
- Combinatorial patterns of histone acetylations and methylations in the human genome
- (2008) Zhibin Wang et al. NATURE GENETICS
- Epigenome dynamics: a quantitative genetics perspective
- (2008) Frank Johannes et al. NATURE REVIEWS GENETICS
- High-Resolution Mapping of Epigenetic Modifications of the Rice Genome Uncovers Interplay between DNA Methylation, Histone Methylation, and Gene Expression
- (2008) X. Li et al. PLANT CELL
- Genome-Wide Association of Histone H3 Lysine Nine Methylation with CHG DNA Methylation in Arabidopsis thaliana
- (2008) Yana V. Bernatavichute et al. PLoS One
- ChromaSig: A Probabilistic Approach to Finding Common Chromatin Signatures in the Human Genome
- (2008) Gary Hon et al. PLoS Computational Biology
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExplorePublish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn More