Molecular Mechanisms of Epigenetic Variation in Plants

Rapid Establishment of Genetic Incompatibility through Natural Epigenetic Variation

(2012) Stéphanie Durand et al.   CURRENT BIOLOGY

A comparison of transcriptome and epigenetic status between closely related species in the genus Arabidopsis

(2012) Takahiro Kawanabe et al.   GENE

Retrotransposons Control Fruit-Specific, Cold-Dependent Accumulation of Anthocyanins in Blood Oranges

(2012) E. Butelli et al.   PLANT CELL

Genome-Wide Analysis of DNA Methylation and Gene Expression Changes in Two Arabidopsis Ecotypes and Their Reciprocal Hybrids

(2012) H. Shen et al.   PLANT CELL

RNAi-independent de novo DNA methylation revealed in Arabidopsis mutants of chromatin remodeling gene DDM1

(2012) Taku Sasaki et al.   PLANT JOURNAL

Trans Chromosomal Methylation in Arabidopsis hybrids

(2012) I. K. Greaves et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Birth, death and subfunctionalization in the Arabidopsis genome

(2012) Matthew T. Rutter et al.   TRENDS IN PLANT SCIENCE

The Epigenome and Plant Development

(2011) Guangming He et al.   Annual Review of Plant Biology

Epigenetic control of gene regulation in plants

(2011) Massimiliano Lauria et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Genetic and epigenetic regulation of stress responses in natural plant populations

(2011) Clícia Grativol et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Paramutation: a process for acquiring trans-generational regulatory states

(2011) Karl F Erhard et al.   CURRENT OPINION IN PLANT BIOLOGY

Monoallelic gene expression and its mechanisms

(2011) Yoshiaki Tarutani et al.   CURRENT OPINION IN PLANT BIOLOGY

Natural epigenetic variation in plant species: a view from the field

(2011) Eric J Richards   CURRENT OPINION IN PLANT BIOLOGY

Selected aspects of transgenerational epigenetic inheritance and resetting in plants

(2011) Jerzy Paszkowski et al.   CURRENT OPINION IN PLANT BIOLOGY

Epigenetic reprogramming during plant reproduction and seed development

(2011) Heike Wollmann et al.   CURRENT OPINION IN PLANT BIOLOGY

Genome-Wide Epigenetic Perturbation Jump-Starts Patterns of Heritable Variation Found in Nature

(2011) Fabrice Roux et al.   GENETICS

Spontaneous epigenetic variation in the Arabidopsis thaliana methylome

(2011) Claude Becker et al.   NATURE

Multisubunit RNA polymerases IV and V: purveyors of non-coding RNA for plant gene silencing

(2011) Jeremy R. Haag et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Epigenetic variation in the FWA gene within the genus Arabidopsis

(2011) Ryo Fujimoto et al.   PLANT JOURNAL

Genome wide gene expression in artificially synthesized amphidiploids of Arabidopsis

(2011) Ryo Fujimoto et al.   PLANT MOLECULAR BIOLOGY

Inflorescence abnormalities occur with overexpression of Arabidopsis lyrata FT in the fwa mutant of Arabidopsis thaliana

(2011) Takahiro Kawanabe et al.   PLANT SCIENCE

Transposable elements and small RNAs contribute to gene expression divergence between Arabidopsis thaliana and Arabidopsis lyrata

(2011) J. D. Hollister et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Transgenerational Epigenetic Instability Is a Source of Novel Methylation Variants

(2011) R. J. Schmitz et al.   SCIENCE

Self-incompatibility: Smi silences through a novel sRNA pathway

(2011) E. Jean Finnegan et al.   TRENDS IN PLANT SCIENCE

Small RNAs Prevent Transcription-Coupled Loss of Histone H3 Lysine 9 Methylation in Arabidopsis thaliana

(2011) Raymond A. Enke et al.   PLoS Genetics

Heritable Epigenetic Variation among Maize Inbreds

(2011) Steve R. Eichten et al.   PLoS Genetics

Environmentally induced phenotypes and DNA methylation: how to deal with unpredictable conditions until the next generation and after

(2010) BERNARD ANGERS et al.   MOLECULAR ECOLOGY

Trans-acting small RNA determines dominance relationships in Brassica self-incompatibility

(2010) Yoshiaki Tarutani et al.   NATURE

Establishing, maintaining and modifying DNA methylation patterns in plants and animals

(2010) Julie A. Law et al.   NATURE REVIEWS GENETICS

Global Epigenetic and Transcriptional Trends among Two Rice Subspecies and Their Reciprocal Hybrids

(2010) G. He et al.   PLANT CELL

Analysis of target sequences of DDM1s in Brassica rapa by MSAP

(2010) Taku Sasaki et al.   PLANT CELL REPORTS

Conservation and divergence of methylation patterning in plants and animals

(2010) S. Feng et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Rate and Molecular Spectrum of Spontaneous Mutations in Arabidopsis thaliana

(2010) S. Ossowski et al.   SCIENCE

Genome-Wide Evolutionary Analysis of Eukaryotic DNA Methylation

(2010) A. Zemach et al.   SCIENCE

RNA-mediated chromatin-based silencing in plants

(2009) Marjori Matzke et al.   CURRENT OPINION IN CELL BIOLOGY

Compromised stability of DNA methylation and transposon immobilization in mosaic Arabidopsis epigenomes

(2009) J. Reinders et al.   GENES & DEVELOPMENT

Bursts of retrotransposition reproduced in Arabidopsis

(2009) Sayuri Tsukahara et al.   NATURE

Unexpected consequences of a sudden and massive transposon amplification on rice gene expression

(2009) Ken Naito et al.   NATURE

A transposon-induced epigenetic change leads to sex determination in melon

(2009) Antoine Martin et al.   NATURE

Selective epigenetic control of retrotransposition in Arabidopsis

(2009) Marie Mirouze et al.   NATURE

Genome-Wide and Organ-Specific Landscapes of Epigenetic Modifications and Their Relationships to mRNA and Small RNA Transcriptomes in Maize

(2009) X. Wang et al.   PLANT CELL

Transposon-induced gene activation as a mechanism generating cluster shape somatic variation in grapevine

(2009) Lucie Fernandez et al.   PLANT JOURNAL

A metastable DWARF1 epigenetic mutant affecting plant stature in rice

(2009) K. Miura et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Extensive Demethylation of Repetitive Elements During Seed Development Underlies Gene Imprinting

(2009) M. Gehring et al.   SCIENCE

A Role for RNAi in the Selective Correction of DNA Methylation Defects

(2009) F. K. Teixeira et al.   SCIENCE

Genome-Wide Demethylation of Arabidopsis Endosperm

(2009) T.-F. Hsieh et al.   SCIENCE

Assessing the Impact of Transgenerational Epigenetic Variation on Complex Traits

(2009) Frank Johannes et al.   PLoS Genetics

Highly Integrated Single-Base Resolution Maps of the Epigenome in Arabidopsis

(2008) Ryan Lister et al.   CELL

Tandem repeats upstream of the Arabidopsis endogene SDC recruit non-CG DNA methylation and initiate siRNA spreading

(2008) I. R. Henderson et al.   GENES & DEVELOPMENT

Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning

(2008) Shawn J. Cokus et al.   NATURE

High-Resolution Mapping of Epigenetic Modifications of the Rice Genome Uncovers Interplay between DNA Methylation, Histone Methylation, and Gene Expression

(2008) X. Li et al.   PLANT CELL

Hypomethylation and transcriptional reactivation of retrotransposon-like sequences in ddm1 transgenic plants of Brassica rapa

(2008) Ryo Fujimoto et al.   PLANT MOLECULAR BIOLOGY

Distinct size distribution of endogenous siRNAs in maize: Evidence from deep sequencing in the mop1-1 mutant

(2008) K. Nobuta et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Epigenetic memory transmission through mitosis and meiosis in plants

(2008) H SAZE   SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY

A Position Effect on the Heritability of Epigenetic Silencing

(2008) Jaswinder Singh et al.   PLoS Genetics

Small RNA-Directed Epigenetic Natural Variation in Arabidopsis thaliana

(2008) Jixian Zhai et al.   PLoS Genetics

Global Analysis of Genetic, Epigenetic and Transcriptional Polymorphisms in Arabidopsis thaliana Using Whole Genome Tiling Arrays

(2008) Xu Zhang et al.   PLoS Genetics

Evolution and Control of Imprinted FWA Genes in the Genus Arabidopsis

(2008) Ryo Fujimoto et al.   PLoS Genetics