The DNA-binding induced (de)AMPylation activity of a Coxiella burnetii Fic enzyme targets Histone H3
出版年份 2023 全文链接
标题
The DNA-binding induced (de)AMPylation activity of a Coxiella burnetii Fic enzyme targets Histone H3
作者
关键词
-
出版物
Communications Biology
Volume 6, Issue 1, Pages -
出版商
Springer Science and Business Media LLC
发表日期
2023-11-06
DOI
10.1038/s42003-023-05494-7
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- ColabFold: making protein folding accessible to all
- (2022) Milot Mirdita et al. NATURE METHODS
- AMPylation and Endoplasmic Reticulum Protein Folding Homeostasis
- (2022) Luke A. Perera et al. Cold Spring Harbor Perspectives in Biology
- A secreted effector with a dual role as a toxin and as a transcriptional factor
- (2022) Dandan Wang et al. Nature Communications
- PredictProtein - Predicting Protein Structure and Function for 29 Years
- (2021) Michael Bernhofer et al. NUCLEIC ACIDS RESEARCH
- Structural basis for selective AMPylation of Rac-subfamily GTPases by Bartonella effector protein 1 (Bep1)
- (2021) Nikolaus Dietz et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Co-regulation and function of FOXM1/RHNO1 bidirectional genes in cancer
- (2021) Carter J Barger et al. eLife
- Highly accurate protein structure prediction with AlphaFold
- (2021) John Jumper et al. NATURE
- Structures of a deAMPylation complex rationalise the switch between antagonistic catalytic activities of FICD
- (2021) Luke A. Perera et al. Nature Communications
- Conformational control of small GTPases by AMPylation
- (2020) Katja Barthelmes et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Transcription Factors and DNA Play Hide and Seek
- (2020) David M. Suter TRENDS IN CELL BIOLOGY
- SMART: recent updates, new developments and status in 2020
- (2020) Ivica Letunic et al. NUCLEIC ACIDS RESEARCH
- Dual conformational recognition by Z-DNA binding protein is important for the B–Z transition process
- (2020) Chaehee Park et al. NUCLEIC ACIDS RESEARCH
- Monoclonal Anti-AMP Antibodies Are Sensitive and Valuable Tools for Detecting Patterns of AMPylation
- (2020) Dorothea Höpfner et al. iScience
- Searching algorithm for Type IV effector proteins (S4TE) 2.0: Improved tools for Type IV effector prediction, analysis and comparison in proteobacteria
- (2019) Christophe Noroy et al. PLoS Computational Biology
- A Ca2+-regulated deAMPylation switch in human and bacterial FIC proteins
- (2019) Simon Veyron et al. Nature Communications
- An oligomeric state‐dependent switch in the ER enzyme FICD regulates AMP ylation and de AMP ylation of BiP
- (2019) Luke A Perera et al. EMBO JOURNAL
- Serine is the major residue for ADP-ribosylation upon DNA damage
- (2018) Luca Palazzo et al. eLife
- OUP accepted manuscript
- (2018) NUCLEIC ACIDS RESEARCH
- The PRIDE database and related tools and resources in 2019: improving support for quantification data
- (2018) Yasset Perez-Riverol et al. NUCLEIC ACIDS RESEARCH
- Fic-mediated deAMPylation is not dependent on homodimerization and rescues toxic AMPylation in flies
- (2017) Amanda K. Casey et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Serine ADP-Ribosylation Depends on HPF1
- (2017) Juan José Bonfiglio et al. MOLECULAR CELL
- From Q Fever to Coxiella burnetii Infection: a Paradigm Change
- (2016) Carole Eldin et al. CLINICAL MICROBIOLOGY REVIEWS
- A Novel Fic (Filamentation Induced by cAMP) Protein fromClostridium difficileReveals an Inhibitory Motif-independent Adenylylation/AMPylation Mechanism
- (2016) Emil Dedic et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- The choice of phorbol 12-myristate 13-acetate differentiation protocol influences the response of THP-1 macrophages to a pro-inflammatory stimulus
- (2016) Maria E. Lund et al. JOURNAL OF IMMUNOLOGICAL METHODS
- Serine is a new target residue for endogenous ADP-ribosylation on histones
- (2016) Orsolya Leidecker et al. Nature Chemical Biology
- FICD acts bifunctionally to AMPylate and de-AMPylate the endoplasmic reticulum chaperone BiP
- (2016) Steffen Preissler et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- UniProt: the universal protein knowledgebase
- (2016) NUCLEIC ACIDS RESEARCH
- FICD acts bifunctionally to AMPylate and de-AMPylate the endoplasmic reticulum chaperone BiP
- (2016) Steffen Preissler et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- The Caenorhabditis elegans Protein FIC-1 Is an AMPylase That Covalently Modifies Heat-Shock 70 Family Proteins, Translation Elongation Factors and Histones
- (2016) Matthias C. Truttmann et al. PLoS Genetics
- HypE-specific Nanobodies as Tools to Modulate HypE-mediated Target AMPylation
- (2015) Matthias C. Truttmann et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- In silico identification of AMPylating enzymes and study of their divergent evolution
- (2015) Shradha Khater et al. Scientific Reports
- AMPylation matches BiP activity to client protein load in the endoplasmic reticulum
- (2015) Steffen Preissler et al. eLife
- MoRDa, an automatic molecular replacement pipeline
- (2015) Alexey Vagin et al. Acta Crystallographica A-Foundation and Advances
- Coxiella burnetii Effector Proteins That Localize to the Parasitophorous Vacuole Membrane Promote Intracellular Replication
- (2014) Charles L. Larson et al. INFECTION AND IMMUNITY
- Unfolded Protein Response-regulatedDrosophilaFic (dFic) Protein Reversibly AMPylates BiP Chaperone during Endoplasmic Reticulum Homeostasis
- (2014) Hyeilin Ham et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- PredictProtein—an open resource for online prediction of protein structural and functional features
- (2014) Guy Yachdav et al. NUCLEIC ACIDS RESEARCH
- The many faces of Fic: structural and functional aspects of Fic enzymes
- (2014) Abel Garcia-Pino et al. TRENDS IN BIOCHEMICAL SCIENCES
- Protein expression, characterization, crystallization and preliminary X-ray crystallographic analysis of a Fic protein fromClostridium difficile
- (2014) Ditte Welner et al. Acta Crystallographica Section F-Structural Biology Communications
- Molecular pathogenesis of the obligate intracellular bacterium Coxiella burnetii
- (2013) Erin J. van Schaik et al. NATURE REVIEWS MICROBIOLOGY
- Effector Protein Translocation by the Coxiella burnetii Dot/Icm Type IV Secretion System Requires Endocytic Maturation of the Pathogen-Occupied Vacuole
- (2013) Hayley J. Newton et al. PLoS One
- Conserved Inhibitory Mechanism and Competent ATP Binding Mode for Adenylyltransferases with Fic Fold
- (2013) Arnaud Goepfert et al. PLoS One
- Probing Allostery Through DNA
- (2013) S. Kim et al. SCIENCE
- Implementing an X-ray validation pipeline for the Protein Data Bank
- (2012) Swanand Gore et al. ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY
- Completion of autobuilt protein models using a database of protein fragments
- (2012) Kevin Cowtan ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY
- One-Step Sequence- and Ligation-Independent Cloning as a Rapid and Versatile Cloning Method for Functional Genomics Studies
- (2012) Jae-Yeon Jeong et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Probing adenylation: using a fluorescently labelled ATP probe to directly label and immunoprecipitate VopS substrates
- (2012) Daniel M. Lewallen et al. Molecular BioSystems
- Adenylylation control by intra- or intermolecular active-site obstruction in Fic proteins
- (2012) Philipp Engel et al. NATURE
- Coxiella burnetii Induces Apoptosis during Early Stage Infection via a Caspase-Independent Pathway in Human Monocytic THP-1 Cells
- (2012) Yan Zhang et al. PLoS One
- An introduction to data reduction: space-group determination, scaling and intensity statistics
- (2011) Philip R. Evans ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY
- REFMAC5 for the refinement of macromolecular crystal structures
- (2011) Garib N. Murshudov et al. ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY
- Overview of theCCP4 suite and current developments
- (2011) Martyn D. Winn et al. ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY
- Modulation of Rab GTPase function by a protein phosphocholine transferase
- (2011) Shaeri Mukherjee et al. NATURE
- High Cleavage Efficiency of a 2A Peptide Derived from Porcine Teschovirus-1 in Human Cell Lines, Zebrafish and Mice
- (2011) Jin Hee Kim et al. PLoS One
- Dot/Icm Type IVB Secretion System Requirements for Coxiella burnetii Growth in Human Macrophages
- (2011) P. A. Beare et al. mBio
- The Coxiella burnetii Dot/Icm System Delivers a Unique Repertoire of Type IV Effectors into Host Cells and Is Required for Intracellular Replication
- (2011) Kimberly L. Carey et al. PLoS Pathogens
- XDS
- (2010) Wolfgang Kabsch ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY
- Features and development ofCoot
- (2010) P. Emsley et al. ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY
- PHENIX: a comprehensive Python-based system for macromolecular structure solution
- (2010) Paul D. Adams et al. ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY
- Kinetic and Structural Insights into the Mechanism of AMPylation by VopS Fic Domain
- (2010) Phi Luong et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Structural basis of Fic-mediated adenylylation
- (2010) Junyu Xiao et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- MolProbity: all-atom structure validation for macromolecular crystallography
- (2009) Vincent B. Chen et al. ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY
- The Fic Domain: Regulation of Cell Signaling by Adenylylation
- (2009) Carolyn A. Worby et al. MOLECULAR CELL
- Circular dichroism and conformational polymorphism of DNA
- (2009) J. Kypr et al. NUCLEIC ACIDS RESEARCH
- Fido, a Novel AMPylation Domain Common to Fic, Doc, and AvrB
- (2009) Lisa N. Kinch et al. PLoS One
- MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification
- (2008) Jürgen Cox et al. NATURE BIOTECHNOLOGY
- PDBsum new things
- (2008) R. A. Laskowski NUCLEIC ACIDS RESEARCH
- Crystal structure of the Fic (Filamentation induced by cAMP) family protein SO4266 (gi|24375750) from Shewanella oneidensis MR-1 at 1.6 Å resolution
- (2008) Debanu Das et al. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
- AMPylation of Rho GTPases by Vibrio VopS Disrupts Effector Binding and Downstream Signaling
- (2008) M. L. Yarbrough et al. SCIENCE
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