Cocrystallization of ubiquitin–deubiquitinase complexes through disulfide linkage

The CCP4 suite: integrative software for macromolecular crystallography

(2023) Jon Agirre et al.   Acta Crystallographica Section D-Structural Biology

Mechanism of Lys6 poly-ubiquitin specificity by the L. pneumophila deubiquitinase LotA

(2022) Gus D. Warren et al.   MOLECULAR CELL

Insights into Ubiquitin Product Release in Hydrolysis Catalyzed by the Bacterial Deubiquitinase SdeA

(2021) Michael J. Sheedlo et al.   BIOCHEMISTRY

The bacterial deubiquitinase Ceg23 regulates the association of Lys-63–linked polyubiquitin molecules on the Legionella phagosome

(2020) Kelong Ma et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

The Two Deubiquitinating Enzymes from Chlamydia trachomatis Have Distinct Ubiquitin Recognition Properties

(2020) John M. Hausman et al.   BIOCHEMISTRY

A deubiquitylase with an unusually high-affinity ubiquitin-binding domain from the scrub typhus pathogen Orientia tsutsugamushi

(2020) Jason M. Berk et al.   Nature Communications

Legionella effector MavC targets the Ube2N~Ub conjugate for noncanonical ubiquitination

(2020) Kedar Puvar et al.   Nature Communications

Macromolecular structure determination using X-rays, neutrons and electrons: recent developments in Phenix

(2019) Dorothee Liebschner et al.   Acta Crystallographica Section D-Structural Biology

Bacterial DUBs: deubiquitination beyond the seven classes

(2019) Thomas Hermanns et al.   BIOCHEMICAL SOCIETY TRANSACTIONS

β-Sheet Augmentation Is a Conserved Mechanism of Priming HECT E3 Ligases for Ubiquitin Ligation

(2018) Magnus Jäckl et al.   JOURNAL OF MOLECULAR BIOLOGY

Discovery and Characterization of ZUFSP/ZUP1, a Distinct Deubiquitinase Class Important for Genome Stability

(2018) Dominika Kwasna et al.   MOLECULAR CELL

Reactive-site-centric chemoproteomics identifies a distinct class of deubiquitinase enzymes

(2018) David S. Hewings et al.   Nature Communications

The Molecular Basis for Ubiquitin and Ubiquitin-like Specificities in Bacterial Effector Proteases

(2016) Jonathan N. Pruneda et al.   MOLECULAR CELL

Crystal Structure of a Ube2S-Ubiquitin Conjugate

(2016) Sonja Lorenz et al.   PLoS One

Structural basis of substrate recognition by a bacterial deubiquitinase important for dynamics of phagosome ubiquitination

(2015) Michael J. Sheedlo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Insights into the Mechanism of Deubiquitination by JAMM Deubiquitinases from Cocrystal Structures of the Enzyme with the Substrate and Product

(2014) Rashmi K. Shrestha et al.   BIOCHEMISTRY

How good are my data and what is the resolution?

(2013) Philip R. Evans et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

Regulation of proteolysis by human deubiquitinating enzymes

(2013) Ziad M. Eletr et al.   BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH

OTULIN Antagonizes LUBAC Signaling by Specifically Hydrolyzing Met1-Linked Polyubiquitin

(2013) Kirstin Keusekotten et al.   CELL

Activity-based diubiquitin probes for elucidating the linkage specificity of deubiquitinating enzymes

(2013) Guorui Li et al.   CHEMICAL COMMUNICATIONS

Structure of a ubiquitin-loaded HECT ligase reveals the molecular basis for catalytic priming

(2013) Elena Maspero et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Dehydroalanine-Based Diubiquitin Activity Probes

(2013) Najat Haj-Yahya et al.   ORGANIC LETTERS

Mechanism of ubiquitin ligation and lysine prioritization by a HECT E3

(2013) Hari B Kamadurai et al.   eLife

Ubiquitin-Binding Proteins: Decoders of Ubiquitin-Mediated Cellular Functions

(2012) Koraljka Husnjak et al.   Annual Review of Biochemistry

The Ubiquitin Code

(2012) David Komander et al.   Annual Review of Biochemistry

Contribution of active site glutamine to rate enhancement in ubiquitin C-terminal hydrolases

(2012) David A. Boudreaux et al.   FEBS Journal

The mechanism of OTUB1-mediated inhibition of ubiquitination

(2012) Reuven Wiener et al.   NATURE

XDS

(2010) Wolfgang Kabsch   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

Features and development ofCoot

(2010) P. Emsley et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

Ubiquitin vinyl methyl ester binding orients the misaligned active site of the ubiquitin hydrolase UCHL1 into productive conformation

(2010) D. A. Boudreaux et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

MolProbity: all-atom structure validation for macromolecular crystallography

(2009) Vincent B. Chen et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

Structural basis for specific cleavage of Lys 63-linked polyubiquitin chains

(2008) Yusuke Sato et al.   NATURE