标题
Machine Learning Suggests That Small Size Helps Broaden Plasmid Host Range
作者
关键词
-
出版物
Genes
Volume 14, Issue 11, Pages 2044
出版商
MDPI AG
发表日期
2023-11-05
DOI
10.3390/genes14112044
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- HOTSPOT: hierarchical host prediction for assembled plasmid contigs with transformer
- (2023) Yongxin Ji et al. BIOINFORMATICS
- Restriction-modification systems have shaped the evolution and distribution of plasmids across bacteria
- (2023) Liam P Shaw et al. NUCLEIC ACIDS RESEARCH
- Global transmission of broad-host-range plasmids derived from the human gut microbiome
- (2023) Lili Yang et al. NUCLEIC ACIDS RESEARCH
- Plasmid classifications
- (2023) M. Pilar Garcillán-Barcia et al. PLASMID
- Emergence of new IncHI2 multidrug-resistance plasmids carrying VIM-1 metallo-β-lactamase in Escherichia coli in Norway
- (2023) Nachiket P Marathe et al. Lancet Microbe
- Structural and functional diversity of type IV secretion systems
- (2023) Tiago R. D. Costa et al. NATURE REVIEWS MICROBIOLOGY
- Resistome expansion in disease-associated human gut microbiomes
- (2023) Simen Fredriksen et al. Microbiome
- Biology and evolution of bacterial toxin–antitoxin systems
- (2022) Dukas Jurėnas et al. NATURE REVIEWS MICROBIOLOGY
- PlasmidHostFinder: Prediction of Plasmid Hosts Using Random Forest
- (2022) Derya Aytan-Aktug et al. mSystems
- Metabolic genes on conjugative plasmids are highly prevalent in Escherichia coli and can protect against antibiotic treatment
- (2022) Alana Palomino et al. ISME Journal
- CARD 2023: expanded curation, support for machine learning, and resistome prediction at the Comprehensive Antibiotic Resistance Database
- (2022) Brian P Alcock et al. NUCLEIC ACIDS RESEARCH
- Epidemiology of Plasmid Lineages Mediating the Spread of Extended-Spectrum Beta-Lactamases among Clinical Escherichia coli
- (2022) Bejan Mahmud et al. mSystems
- Targeted bacterial conjugation mediated by synthetic cell-to-cell adhesions
- (2022) Marta Robledo et al. NUCLEIC ACIDS RESEARCH
- A Brief History of Plasmids
- (2022) Donald R. Helinski EcoSal Plus
- Indirect Selection against Antibiotic Resistance via Specialized Plasmid-Dependent Bacteriophages
- (2021) Reetta Penttinen et al. Microorganisms
- COPLA, a taxonomic classifier of plasmids
- (2021) Santiago Redondo-Salvo et al. BMC BIOINFORMATICS
- Protein Transfer through an F Plasmid-Encoded Type IV Secretion System Suppresses the Mating-Induced SOS Response
- (2021) Abu Amar M. Al Mamun et al. mBio
- Re-evaluating the evidence for a universal genetic boundary among microbial species
- (2021) Connor S. Murray et al. Nature Communications
- AMRFinderPlus and the Reference Gene Catalog facilitate examination of the genomic links among antimicrobial resistance, stress response, and virulence
- (2021) Michael Feldgarden et al. Scientific Reports
- Deeplasmid: deep learning accurately separates plasmids from bacterial chromosomes
- (2021) William B Andreopoulos et al. NUCLEIC ACIDS RESEARCH
- PLSDB: advancing a comprehensive database of bacterial plasmids
- (2021) Georges P Schmartz et al. NUCLEIC ACIDS RESEARCH
- Ecological and evolutionary solutions to the plasmid paradox
- (2021) Michael A. Brockhurst et al. TRENDS IN MICROBIOLOGY
- Analysis of COMPASS, a New Comprehensive Plasmid Database Revealed Prevalence of Multireplicon and Extensive Diversity of IncF Plasmids
- (2020) Pierre-Emmanuel Douarre et al. Frontiers in Microbiology
- Pathways for horizontal gene transfer in bacteria revealed by a global map of their plasmids
- (2020) Santiago Redondo-Salvo et al. Nature Communications
- A comparative analysis of gradient boosting algorithms
- (2020) Candice Bentéjac et al. ARTIFICIAL INTELLIGENCE REVIEW
- Universal whole-sequence-based plasmid typing and its utility to prediction of host range and epidemiological surveillance
- (2020) James Robertson et al. Microbial Genomics
- On the emergence of P-Loop NTPase and Rossmann enzymes from a Beta-Alpha-Beta ancestral fragment
- (2020) Liam M Longo et al. eLife
- Defining and combating antibiotic resistance from One Health and Global Health perspectives
- (2019) Sara Hernando-Amado et al. Nature Microbiology
- Environmental and clinical antibiotic resistomes, same only different
- (2019) Gerard D Wright CURRENT OPINION IN MICROBIOLOGY
- Plasmid persistence: costs, benefits, and the plasmid paradox
- (2018) Amanda C. Carroll et al. CANADIAN JOURNAL OF MICROBIOLOGY
- PlasFlow: predicting plasmid sequences in metagenomic data using genome signatures
- (2018) Pawel S Krawczyk et al. NUCLEIC ACIDS RESEARCH
- High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries
- (2018) Chirag Jain et al. Nature Communications
- β-Lactams and β-Lactamase Inhibitors: An Overview
- (2016) Karen Bush et al. Cold Spring Harbor Perspectives in Medicine
- Tackling antibiotic resistance: the environmental framework
- (2015) Thomas U. Berendonk et al. NATURE REVIEWS MICROBIOLOGY
- In SilicoDetection and Typing of Plasmids using PlasmidFinder and Plasmid Multilocus Sequence Typing
- (2014) Alessandra Carattoli et al. ANTIMICROBIAL AGENTS AND CHEMOTHERAPY
- Prokka: rapid prokaryotic genome annotation
- (2014) T. Seemann BIOINFORMATICS
- The genetic basis of the fitness costs of antimicrobial resistance: a meta-analysis approach
- (2014) Tom Vogwill et al. Evolutionary Applications
- Broad host range plasmids can invade an unexpectedly diverse fraction of a soil bacterial community
- (2014) Uli Klümper et al. ISME Journal
- Plasmid Flux in Escherichia coli ST131 Sublineages, Analyzed by Plasmid Constellation Network (PLACNET), a New Method for Plasmid Reconstruction from Whole Genome Sequences
- (2014) Val F. Lanza et al. PLoS Genetics
- Subcellular location of the coupling protein TrwB and the role of its transmembrane domain
- (2013) Rosa L. Segura et al. BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES
- Mobility of Plasmids
- (2010) C. Smillie et al. MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS
- BcsQ is an essential component of theEscherichia colicellulose biosynthesis apparatus that localizes at the bacterial cell pole
- (2009) Benjamin Le Quéré et al. MOLECULAR MICROBIOLOGY
- The structural biology of type IV secretion systems
- (2009) Rémi Fronzes et al. NATURE REVIEWS MICROBIOLOGY
- Differential Regulation of Horizontally Acquired and Core Genome Genes by the Bacterial Modulator H-NS
- (2009) Rosa C. Baños et al. PLoS Genetics
Add your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload NowAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started