ZMYM2 controls human transposable element transcription through distinct co-regulatory complexes

Roles of transposable elements in the regulation of mammalian transcription

(2022) Raquel Fueyo et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

ZMYM2 restricts 53BP1 at DNA double-strand breaks to favor BRCA1 loading and homologous recombination

(2022) Doohyung Lee et al.   NUCLEIC ACIDS RESEARCH

Identification and characterization of BEND2 as a key regulator of meiosis during mouse spermatogenesis

(2022) Longfei Ma et al.   Science Advances

3D genome, on repeat: Higher-order folding principles of the heterochromatinized repetitive genome

(2022) Spencer A. Haws et al.   CELL

DNA sequence and chromatin modifiers cooperate to confer epigenetic bistability at imprinting control regions

(2022) Stefan Butz et al.   NATURE GENETICS

Proteomic analysis identifies ZMYM2 as endogenous binding partner of TBX18 protein in 293 and A549 cells

(2021) Timo H.-W. Lüdtke et al.   BIOCHEMICAL JOURNAL

DUX-miR-344-ZMYM2-Mediated Activation of MERVL LTRs Induces a Totipotent 2C-like State

(2020) Fan Yang et al.   Cell Stem Cell

KAP1 Is a Chromatin Reader that Couples Steps of RNA Polymerase II Transcription to Sustain Oncogenic Programs

(2020) Curtis W. Bacon et al.   MOLECULAR CELL

Characterization of the zinc finger proteins ZMYM2 and ZMYM4 as novel B-MYB binding proteins

(2020) Hannah Cibis et al.   Scientific Reports

Identification of SUMO binding proteins enriched after covalent photo-crosslinking

(2020) Kira Brüninghoff et al.   ACS Chemical Biology

Occupancy maps of 208 chromatin-associated proteins in one human cell type

(2020) E. Christopher Partridge et al.   NATURE

Methylation-directed glycosylation of chromatin factors represses retrotransposon promoters

(2020) Mathieu Boulard et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Chromatin Regulator ZMYM2 Restricts Human Pluripotent Stem Cell Growth and Is Essential for Teratoma Formation

(2020) Elyad Lezmi et al.   Stem Cell Reports

Mutations of the Transcriptional Corepressor ZMYM2 Cause Syndromic Urinary Tract Malformations

(2020) Dervla M. Connaughton et al.   AMERICAN JOURNAL OF HUMAN GENETICS

The KRAB-Zinc finger protein ZFP708 mediates epigenetic repression at RMER19B retrotransposons

(2019) Michelle K. Y. Seah et al.   DEVELOPMENT

Metascape provides a biologist-oriented resource for the analysis of systems-level datasets

(2019) Yingyao Zhou et al.   Nature Communications

ZIC3 Controls the Transition from Naive to Primed Pluripotency

(2019) Shen-Hsi Yang et al.   Cell Reports

The Arms Race Between KRAB–Zinc Finger Proteins and Endogenous Retroelements and Its Impact on Mammals

(2019) Melania Bruno et al.   Annual Review of Genetics

The ChAHP Complex Counteracts Chromatin Looping at CTCF Sites that Emerged from SINE Expansions in Mouse

(2019) Lucas J.T. Kaaij et al.   CELL

Transcriptionally active HERV-H retrotransposons demarcate topologically associating domains in human pluripotent stem cells

(2019) Yanxiao Zhang et al.   NATURE GENETICS

TFIIIC Binding to Alu Elements Controls Gene Expression via Chromatin Looping and Histone Acetylation

(2019) Roberto Ferrari et al.   MOLECULAR CELL

Transcription factors orchestrate dynamic interplay between genome topology and gene regulation during cell reprogramming

(2018) Ralph Stadhouders et al.   NATURE GENETICS

Activity-dependent neuroprotective protein recruits HP1 and CHD4 to control lineage-specifying genes

(2018) Veronika Ostapcuk et al.   NATURE

SUMO Safeguards Somatic and Pluripotent Cell Identities by Enforcing Distinct Chromatin States

(2018) Jack-Christophe Cossec et al.   Cell Stem Cell

RNAi Reveals Phase-Specific Global Regulators of Human Somatic Cell Reprogramming

(2016) Cheng-Xu Delon Toh et al.   Cell Reports

Integrative analysis of 111 reference human epigenomes

(2015) Anshul Kundaje et al.   NATURE

Genome-wide binding studies reveal DNA binding specificity mechanisms and functional interplay amongst Forkhead transcription factors

(2015) Xi Chen et al.   NUCLEIC ACIDS RESEARCH

Screen for multi-SUMO–binding proteins reveals a multi-SIM–binding mechanism for recruitment of the transcriptional regulator ZMYM2 to chromatin

(2015) Elisa Aguilar-Martinez et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Characterization of the SUMO-Binding Activity of the Myeloproliferative and Mental Retardation (MYM)-Type Zinc Fingers in ZNF261 and ZNF198

(2014) Catherine M. Guzzo et al.   PLoS One

Endogenous Purification Reveals GREB1 as a Key Estrogen Receptor Regulatory Factor

(2013) Hisham Mohammed et al.   Cell Reports

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

Topological domains in mammalian genomes identified by analysis of chromatin interactions

(2012) Jesse R. Dixon et al.   NATURE

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

The Forkhead Transcription Factor FOXK2 Promotes AP-1-Mediated Transcriptional Regulation

(2011) Z. Ji et al.   MOLECULAR AND CELLULAR BIOLOGY

Simple Combinations of Lineage-Determining Transcription Factors Prime cis-Regulatory Elements Required for Macrophage and B Cell Identities

(2010) Sven Heinz et al.   MOLECULAR CELL

GREAT improves functional interpretation of cis-regulatory regions

(2010) Cory Y McLean et al.   NATURE BIOTECHNOLOGY

SUMO association with repressor complexes, emerging routes for transcriptional control

(2009) Mario Garcia-Dominguez et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

STRING 8--a global view on proteins and their functional interactions in 630 organisms

(2008) L. J. Jensen et al.   NUCLEIC ACIDS RESEARCH

ZNF198 Stabilizes the LSD1–CoREST–HDAC1 Complex on Chromatin through Its MYM-Type Zinc Fingers

(2008) Christian B. Gocke et al.   PLoS One

Model-based Analysis of ChIP-Seq (MACS)

(2008) Yong Zhang et al.   GENOME BIOLOGY