Telomere-to-telomere genome of the allotetraploid legume Sesbania cannabina reveals transposon-driven subgenome divergence and mechanisms of alkaline stress tolerance

Era of gapless plant genomes: innovations in sequencing and mapping technologies revolutionize genomics and breeding

(2023) Nicholas Gladman et al.   CURRENT OPINION IN BIOTECHNOLOGY

Phylogenomic discovery of deleterious mutations facilitates hybrid potato breeding

(2023) Yaoyao Wu et al.   CELL

The giant diploid faba genome unlocks variation in a global protein crop

(2023) Murukarthick Jayakodi et al.   NATURE

A complete telomere-to-telomere assembly of the maize genome

(2023) Jian Chen et al.   NATURE GENETICS

A Gγ protein regulates alkaline sensitivity in crops

(2023) Huili Zhang et al.   SCIENCE

A comprehensive overview of cotton genomics, biotechnology and molecular biological studies

(2023) Xingpeng Wen et al.   Science China-Life Sciences

The complete reference genome for grapevine (Vitis vinifera L.) genetics and breeding

(2023) Xiaoya Shi et al.   Horticulture Research

Genomic insights into the recent chromosome reduction of autopolyploid sugarcane Saccharum spontaneum

(2022) Qing Zhang et al.   NATURE GENETICS

S ub P haser : a robust allopolyploid subgenome phasing method based on subgenome‐specific k ‐mers

(2022) Kai‐Hua Jia et al.   NEW PHYTOLOGIST

Insights of section-wide pan-genome into hybrid potato breeding

(2022) Gai Huang et al.   Science China-Life Sciences

Improved pea reference genome and pan-genome highlight genomic features and evolutionary characteristics

(2022) Tao Yang et al.   NATURE GENETICS

Genome-wide signatures of the geographic expansion and breeding of soybean

(2022) Ying-Hui Li et al.   Science China-Life Sciences

Wheat genomic study for genetic improvement of traits in China

(2022) Jun Xiao et al.   Science China-Life Sciences

Adaptive evaluation of green manure rotation for a low fertility farmland system: Impacts on crop yield, soil nutrients, and soil microbial community

(2022) Rong Yang et al.   CATENA

A route to de novo domestication of wild allotetraploid rice

(2021) Hong Yu et al.   CELL

Haplotype-resolved de novo assembly using phased assembly graphs with hifiasm

(2021) Haoyu Cheng et al.   NATURE METHODS

Genetics of nodulation in Aeschynomene evenia uncovers mechanisms of the rhizobium–legume symbiosis

(2021) Johan Quilbé et al.   Nature Communications

Abiotic stress responses in plants

(2021) Huiming Zhang et al.   NATURE REVIEWS GENETICS

The genetic and epigenetic landscape of the Arabidopsis centromeres

(2021) Matthew Naish et al.   SCIENCE

Green and animal manure use in organic field crop systems

(2020) Patrick M. Carr et al.   AGRONOMY JOURNAL

Genome sequence of Gossypium herbaceum and genome updates of Gossypium arboreum and Gossypium hirsutum provide insights into cotton A-genome evolution

(2020) Gai Huang et al.   NATURE GENETICS

A high-quality genome sequence of alkaligrass provides insights into halophyte stress tolerance

(2020) Wenting Zhang et al.   Science China-Life Sciences

GenomeScope 2.0 and Smudgeplot for reference-free profiling of polyploid genomes

(2020) T. Rhyker Ranallo-Benavidez et al.   Nature Communications

A High-Quality Genome Sequence of Model Legume Lotus japonicus (MG-20) Provides Insights into the Evolution of Root Nodule Symbiosis

(2020) Haoxing Li et al.   Genes

Pan-Genome of Wild and Cultivated Soybeans

(2020) Yucheng Liu et al.   CELL

Potassium and phosphorus transport and signaling in plants

(2020) Yi Wang et al.   Journal of Integrative Plant Biology

The barley pan-genome reveals the hidden legacy of mutation breeding

(2020) Murukarthick Jayakodi et al.   NATURE

The genome sequence of segmental allotetraploid peanut Arachis hypogaea

(2019) David J. Bertioli et al.   NATURE GENETICS

The genome of cultivated peanut provides insight into legume karyotypes, polyploid evolution and crop domestication

(2019) Weijian Zhuang et al.   NATURE GENETICS

MCMCtreeR: functions to prepare MCMCtree analyses and visualize posterior ages on trees

(2019) Mark N Puttick   BIOINFORMATICS

A Review of the Economic Botany of Sesbania (Leguminosae)

(2019) Saowalak Bunma et al.   BOTANICAL REVIEW

Mechanisms of phosphate transport

(2019) Moshe Levi et al.   Nature Reviews Nephrology

The Characteristics of Soil C, N, and P Stoichiometric Ratios as Affected by Geological Background in a Karst Graben Area, Southwest China

(2019) Hui Yang et al.   Forests

A reference genome for pea provides insight into legume genome evolution

(2019) Jonathan Kreplak et al.   NATURE GENETICS

Prospects of using leguminous green manuring crop Sesbania rostrata for supplementing fertilizer nitrogen in rice production and control of environmental pollution

(2019) Umme A. Naher et al.   JOURNAL OF PLANT NUTRITION

Minimap2: pairwise alignment for nucleotide sequences

(2018) Heng Li   BIOINFORMATICS

MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms

(2018) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

Phylogenomics reveals multiple losses of nitrogen-fixing root nodule symbiosis

(2018) Maximilian Griesmann et al.   SCIENCE

Effects of salt and alkali stresses on growth and ion balance in rice (Oryza sativa L.)

(2018) H. Wang et al.   PLANT SOIL AND ENVIRONMENT

De novo assembly of a Chinese soybean genome

(2018) Yanting Shen et al.   Science China-Life Sciences

Root Damage under Alkaline Stress Is Associated with Reactive Oxygen Species Accumulation in Rice (Oryza sativa L.)

(2017) Hui Zhang et al.   Frontiers in Plant Science

Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown

(2016) Mihaela Pertea et al.   Nature Protocols

W-IQ-TREE: a fast online phylogenetic tool for maximum likelihood analysis

(2016) Jana Trifinopoulos et al.   NUCLEIC ACIDS RESEARCH

Physiological and transcriptional responses of contrasting alfalfa (Medicago sativa L.) varieties to salt stress

(2016) Wenli Quan et al.   PLANT CELL TISSUE AND ORGAN CULTURE

AGlycine sojamethionine sulfoxide reductase B5a interacts with the Ca2+/CAM-binding kinase GsCBRLK and activates ROS signaling under carbonate alkaline stress

(2016) Xiaoli Sun et al.   PLANT JOURNAL

Genetic diversity and community structure of rhizobia nodulating Sesbania cannabina in saline–alkaline soils

(2016) Yan Li et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Using euhalophytes to understand salt tolerance and to develop saline agriculture: Suaeda salsa as a promising model

(2014) Jie Song et al.   ANNALS OF BOTANY

ParaAT: A parallel tool for constructing multiple protein-coding DNA alignments

(2012) Zhang Zhang et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

A fast, lock-free approach for efficient parallel counting of occurrences of k-mers

(2011) Guillaume Marçais et al.   BIOINFORMATICS

MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects

(2011) Carson Holt et al.   BMC BIOINFORMATICS

Genome sequence of the palaeopolyploid soybean

(2010) Jeremy Schmutz et al.   NATURE

Using native and syntenically mapped cDNA alignments to improve de novo gene finding

(2008) Mario Stanke et al.   BIOINFORMATICS

Genetic transformation and regeneration of Sesbania drummondii using cotyledonary nodes

(2008) Priya Padmanabhan et al.   PLANT CELL REPORTS

Synteny and Collinearity in Plant Genomes

(2008) H. Tang et al.   SCIENCE