Echoes of ancient introgression punctuate stable genomic lineages in the evolution of figs

Pollinator and host sharing lead to hybridization and introgression in Panamanian free‐standing figs, but not in their pollinator wasps

(2023) Jordan D. Satler et al.   Ecology and Evolution

Interspecific hybridization and island colonization history, not rarity, most strongly affect the genetic diversity in a clade of Mascarene-endemic trees

(2022) Alexander G Linan et al.   JOURNAL OF HEREDITY

Ghost Lineages Highly Influence the Interpretation of Introgression Tests

(2022) Théo Tricou et al.   SYSTEMATIC BIOLOGY

Hybridization and introgression are prevalent in Southern European Erysimum (Brassicaceae) species

(2022) Carolina Osuna-Mascaró et al.   ANNALS OF BOTANY

Phylogenomic analyses highlight innovation and introgression in the continental radiations of Fagaceae across the Northern Hemisphere

(2022) Biao-Feng Zhou et al.   Nature Communications

Pollinator sharing, copollination, and speciation by host shifting among six closely related dioecious fig species

(2022) Zhi-Hui Su et al.   Communications Biology

Genomic evidence of prevalent hybridization throughout the evolutionary history of the fig-wasp pollination mutualism

(2021) Gang Wang et al.   Nature Communications

Phylogenomic subsampling and the search for phylogenetically reliable loci

(2021) Nicolás Mongiardino Koch   MOLECULAR BIOLOGY AND EVOLUTION

Phylogenomics of Brosimum (Moraceae) and allied genera, including a revised subgeneric system

(2021) Elliot M. Gardner et al.   TAXON

Limited evidence for a positive relationship between hybridization and diversification across seed plant families

(2021) Nora Mitchell et al.   EVOLUTION

Admixture may be extensive among hyperdominant Amazon rainforest tree species

(2021) Drew A. Larson et al.   NEW PHYTOLOGIST

Repeated parallel losses of inflexed stamens in Moraceae: Phylogenomics and generic revision of the tribe Moreae and the reinstatement of the tribe Olmedieae (Moraceae)

(2021) Elliot M. Gardner et al.   TAXON

Evolution and classification of figs (Ficus, Moraceae) and their close relatives (Castilleae) united by involucral bracts

(2020) Wendy L Clement et al.   BOTANICAL JOURNAL OF THE LINNEAN SOCIETY

Genomes of the Banyan Tree and Pollinator Wasp Provide Insights into Fig-Wasp Coevolution

(2020) Xingtan Zhang et al.   CELL

Phylogenetic reconstruction of Ficus subg. Synoecia and its allies (Moraceae), with implications on the origin of the climbing habit

(2020) Zhen Zhang et al.   TAXON

Exploring systematic biases, rooting methods and morphological evidence to unravel the evolutionary history of the genus Ficus (Moraceae)

(2020) Jean‐Yves Rasplus et al.   CLADISTICS

Delimitation of the new tribe Parartocarpeae (Moraceae) is supported by a 333-gene phylogeny and resolves tribal level Moraceae taxonomy

(2019) NYREE J.C. ZEREGA et al.   Phytotaxa

Rush hour at the Museum – Diversification patterns provide new clues for the success of figs ( Ficus L., Moraceae)

(2018) Sam Bruun-Lund et al.   ACTA OECOLOGICA-INTERNATIONAL JOURNAL OF ECOLOGY

Adaptive introgression: a plant perspective

(2018) Adriana Suarez-Gonzalez et al.   Biology Letters

ASTRAL-III: polynomial time species tree reconstruction from partially resolved gene trees

(2018) Chao Zhang et al.   BMC BIOINFORMATICS

OUP accepted manuscript

(2018)   BOTANICAL JOURNAL OF THE LINNEAN SOCIETY

Atlantic forests to the all Americas: Biogeographical history and divergence times of Neotropical Ficus (Moraceae)

(2018) Anderson Ferreira Pinto Machado et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Inferring Phylogenetic Networks Using PhyloNet

(2018) Dingqiao Wen et al.   SYSTEMATIC BIOLOGY

Estimating divergence times and ancestral breeding systems in Ficus and Moraceae

(2018) Qian Zhang et al.   ANNALS OF BOTANY

A Universal Probe Set for Targeted Sequencing of 353 Nuclear Genes from Any Flowering Plant Designed Using k-Medoids Clustering

(2018) Matthew G Johnson et al.   SYSTEMATIC BIOLOGY

First plastid phylogenomic study reveals potential cyto-nuclear discordance in the evolutionary history of Ficus L. (Moraceae)

(2017) Sam Bruun-Lund et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Pollination of Ficus elastica: India rubber re-establishes sexual reproduction in Singapore

(2017) Rhett D. Harrison et al.   Scientific Reports

Genome-wide sequence data suggest the possibility of pollinator sharing by host shift in dioecious figs (Moraceae,Ficus)

(2016) Nakatada Wachi et al.   MOLECULAR ECOLOGY

Low-Coverage, Whole-Genome Sequencing of Artocarpus camansi (Moraceae) for Phylogenetic Marker Development and Gene Discovery

(2016) Elliot M. Gardner et al.   Applications in Plant Sciences

HybPiper: Extracting Coding Sequence and Introns for Phylogenetics from High-Throughput Sequencing Reads Using Target Enrichment

(2016) Matthew G. Johnson et al.   Applications in Plant Sciences

Editorial: Origin of Tropical Diversity: From Clades to Communities

(2016) James E. Richardson et al.   Frontiers in Genetics

The biogeographic origin of a radiation of trees in Madagascar: implications for the assembly of a tropical forest biome

(2015) Sarah Federman et al.   BMC EVOLUTIONARY BIOLOGY

WELKOETOXYLON MULTISERIATUM: FOSSIL MORACEOUS WOOD FROM THE EOCENE GREEN RIVER FORMATION, WYOMING, U.S.A.

(2015) Nareerat Boonchai et al.   IAWA JOURNAL

Population genomics of Bronze Age Eurasia

(2015) Morten E. Allentoft et al.   NATURE

An overview of the infrageneric nomenclature of Ficus (Moraceae)

(2015) Leandro Cardoso Pederneiras et al.   TAXON

Variable mating behaviors and the maintenance of tropical biodiversity

(2015) Charles H. Cannon et al.   Frontiers in Genetics

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

The wasps, bees and ants (Insecta: Vespida=Hymenoptera) from the Insect Limestone (Late Eocene) of the Isle of Wight, UK

(2014) Alexander V. Antropov et al.   Earth and Environmental Science Transactions of the Royal Society of Edinburgh

IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

(2014) Lam-Tung Nguyen et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genetic structure and hybridization in the species group ofFicus auriculata: can closely related sympatricFicusspecies retain their genetic identity while sharing pollinators?

(2014) Z.-D. Wei et al.   MOLECULAR ECOLOGY

Automatic Detection of Key Innovations, Rate Shifts, and Diversity-Dependence on Phylogenetic Trees

(2014) Daniel L. Rabosky   PLoS One

BAMMtools: an R package for the analysis of evolutionary dynamics on phylogenetic trees

(2014) Daniel L. Rabosky et al.   Methods in Ecology and Evolution

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Deep metazoan phylogeny: When different genes tell different stories

(2013) Tetyana Nosenko et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

treePL: divergence time estimation using penalized likelihood for large phylogenies

(2012) Stephen A. Smith et al.   BIOINFORMATICS

An Extreme Case of Plant–Insect Codiversification: Figs and Fig-Pollinating Wasps

(2012) Astrid Cruaud et al.   SYSTEMATIC BIOLOGY

Pollinator sharing in dioecious figs (Ficus: Moraceae)

(2011) ANNIKA M. MOE et al.   BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Floral volatiles, pollinator sharing and diversification in the fig-wasp mutualism: insights from Ficus natalensis, and its two wasp pollinators (South Africa)

(2011) A. Cornille et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

phytools: an R package for phylogenetic comparative biology (and other things)

(2011) Liam J. Revell   Methods in Ecology and Evolution

Ancient fig wasps indicate at least 34 Myr of stasis in their mutualism with fig trees

(2010) S. G. Compton et al.   Biology Letters

Dispersers shape fruit diversity in Ficus (Moraceae)

(2010) S. B. Lomascolo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

(2009) S. Capella-Gutierrez et al.   BIOINFORMATICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix

(2009) M. N. Price et al.   MOLECULAR BIOLOGY AND EVOLUTION

Molecular dating and biogeography of fig-pollinating wasps

(2009) Carlos Lopez-Vaamonde et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Morphological Evolution in the Mulberry Family (Moraceae)

(2009) Wendy L. Clement et al.   SYSTEMATIC BOTANY

Madagascar as a model region of species diversification

(2009) Miguel Vences et al.   TRENDS IN ECOLOGY & EVOLUTION

Gene flow and species delimitation

(2009) Rémy J. Petit et al.   TRENDS IN ECOLOGY & EVOLUTION