Repeated parallel losses of inflexed stamens in Moraceae: Phylogenomics and generic revision of the tribe Moreae and the reinstatement of the tribe Olmedieae (Moraceae)

Strategies for reducing per‐sample costs in target capture sequencing for phylogenomics and population genomics in plants

(2020) Haley Hale et al.   Applications in Plant Sciences

Evolution and classification of figs (Ficus, Moraceae) and their close relatives (Castilleae) united by involucral bracts

(2020) Wendy L Clement et al.   BOTANICAL JOURNAL OF THE LINNEAN SOCIETY

(2757) Proposal to reject the name Antiarideae ( Moraceae )

(2020) Elliot M. Gardner et al.   TAXON

Delimitation of the new tribe Parartocarpeae (Moraceae) is supported by a 333-gene phylogeny and resolves tribal level Moraceae taxonomy

(2019) NYREE J.C. ZEREGA et al.   Phytotaxa

Anatomy solves the puzzle of explosive pollen release in wind‐pollinated urticalean rosids

(2019) Giseli D. Pedersoli et al.   AMERICAN JOURNAL OF BOTANY

Factors Affecting Targeted Sequencing of 353 Nuclear Genes From Herbarium Specimens Spanning the Diversity of Angiosperms

(2019) Grace E. Brewer et al.   Frontiers in Plant Science

Allele phasing has minimal impact on phylogenetic reconstruction from targeted nuclear gene sequences in a case study of Artocarpus

(2018) Heather Rose Kates et al.   AMERICAN JOURNAL OF BOTANY

ape 5.0: an environment for modern phylogenetics and evolutionary analyses in R

(2018) Emmanuel Paradis et al.   BIOINFORMATICS

A Flower in Fruit’s Clothing: Pollination of Jackfruit (Artocarpus heterophyllus, Moraceae) by a New Species of Gall Midge, Clinodiplosis ultracrepidata sp. nov. (Diptera: Cecidomyiidae)

(2018) Elliot M. Gardner et al.   INTERNATIONAL JOURNAL OF PLANT SCIENCES

Bridging the micro- and macroevolutionary levels in phylogenomics: Hyb-Seq solves relationships from populations to species and above

(2018) Tamara Villaverde et al.   NEW PHYTOLOGIST

Inferring Phylogenetic Networks Using PhyloNet

(2018) Dingqiao Wen et al.   SYSTEMATIC BIOLOGY

Testing for Polytomies in Phylogenetic Species Trees Using Quartet Frequencies

(2018) et al.   Genes

Estimating divergence times and ancestral breeding systems in Ficus and Moraceae

(2018) Qian Zhang et al.   ANNALS OF BOTANY

A Universal Probe Set for Targeted Sequencing of 353 Nuclear Genes from Any Flowering Plant Designed Using k-Medoids Clustering

(2018) Matthew G Johnson et al.   SYSTEMATIC BIOLOGY

The Tree of Life: China project

(2016) Zhi-Duan Chen et al.   Journal of Systematics and Evolution

A maximum pseudo-likelihood approach for phylogenetic networks

(2015) Yun Yu et al.   BMC GENOMICS

Sorocea angustifolia(Moraceae), a New Species ofSoroceafrom the Atlantic Forest in Brazil

(2015) Alessandra dos Santos et al.   NOVON

Re-straightening the story of Streblus brunonianus and S. pendulinus (Moraceae)

(2015) Barry Conn   TELOPEA

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Automatic Detection of Key Innovations, Rate Shifts, and Diversity-Dependence on Phylogenetic Trees

(2014) Daniel L. Rabosky   PLoS One

Analysis and Visualization of Complex Macroevolutionary Dynamics: An Example from Australian Scincid Lizards

(2014) Daniel L. Rabosky et al.   SYSTEMATIC BIOLOGY

BAMMtools: an R package for the analysis of evolutionary dynamics on phylogenetic trees

(2014) Daniel L. Rabosky et al.   Methods in Ecology and Evolution

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Molecular dating of phylogenies by likelihood methods: A comparison of models and a new information criterion

(2013) Emmanuel Paradis   MOLECULAR PHYLOGENETICS AND EVOLUTION

A New Sorocea (Moraceae) From The Atlantic Rainforest, Brazil

(2013) Anderson F. P. Machado et al.   SYSTEMATIC BOTANY

Rates of speciation and morphological evolution are correlated across the largest vertebrate radiation

(2013) Daniel L. Rabosky et al.   Nature Communications

Phylogenetics of Morus (Moraceae) Inferred from ITS and trnL-trnF Sequence Data

(2012) Madhav Nepal   SYSTEMATIC BOTANY

Diversitree: comparative phylogenetic analyses of diversification in R

(2012) Richard G. FitzJohn   Methods in Ecology and Evolution

phytools: an R package for phylogenetic comparative biology (and other things)

(2011) Liam J. Revell   Methods in Ecology and Evolution

phangorn: phylogenetic analysis in R

(2010) Klaus Peter Schliep   BIOINFORMATICS

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

Phylogeny and Recircumscription of Artocarpeae (Moraceae) with a Focus on Artocarpus

(2010) Nyree J. C. Zerega et al.   SYSTEMATIC BOTANY

trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

(2009) S. Capella-Gutierrez et al.   BIOINFORMATICS

Sorocea carautana (Moraceae): A New Species from Southeastern Brazil

(2009) M. D. M. Vianna Filho et al.   NOVON

Plant DNA barcodes and a community phylogeny of a tropical forest dynamics plot in Panama

(2009) W. J. Kress et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Morphological Evolution in the Mulberry Family (Moraceae)

(2009) Wendy L. Clement et al.   SYSTEMATIC BOTANY

Penalized Likelihood Phylogenetic Inference: Bridging the Parsimony-Likelihood Gap

(2008) Junhyong Kim et al.   SYSTEMATIC BIOLOGY