Comparative cross-species analysis of Glycine BBX gene family reveals lineage-specific evolution and expansion

Genome-Wide Identification of the B-Box Gene Family and Expression Analysis Suggests Their Potential Role in Photoperiod-Mediated β-Carotene Accumulation in the Endocarp of Cucumber (Cucumis sativus L.) Fruit

(2022) Hesbon Ochieng Obel et al.   Genes

Characterization of Mungbean CONSTANS-LIKE Genes and Functional Analysis of CONSTANS-LIKE 2 in the Regulation of Flowering Time in Arabidopsis

(2021) Chenyang Liu et al.   Frontiers in Plant Science

Comprehensive identification and expression analysis of B-Box genes in cotton

(2021) Zhen Feng et al.   BMC GENOMICS

Genome-wide identification and analysis of B-BOX gene family in grapevine reveal its potential functions in berry development

(2020) Hongru Wei et al.   BMC PLANT BIOLOGY

IbBBX24 Promotes the Jasmonic Acid Pathway and Enhances Fusarium Wilt Resistance in Sweet Potato

(2020) Huan Zhang et al.   PLANT CELL

The ortholog conjecture revisited: the value of orthologs and paralogs in function prediction

(2020) Moses Stamboulian et al.   BIOINFORMATICS

Characterization of B-BOX gene family and their expression profiles under hormonal, abiotic and metal stresses in Poaceae plants

(2019) Abdullah Shalmani et al.   BMC GENOMICS

A reference-grade wild soybean genome

(2019) Min Xie et al.   Nature Communications

BBX16, a B‐box protein, positively regulates light‐induced anthocyanin accumulation by activating MYB10 in red pear

(2019) Songling Bai et al.   PLANT BIOTECHNOLOGY JOURNAL

B-box Proteins in Arachis duranensis: Genome-Wide Characterization and Expression Profiles Analysis

(2019) Hanqi Jin et al.   Agronomy-Basel

MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms

(2018) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

Centromeric DNA characterization in the model grass Brachypodium distachyon provides insights on the evolution of the genus

(2018) Yinjia Li et al.   PLANT JOURNAL

Two B-Box Proteins Regulate Photomorphogenesis by Oppositely Modulating HY5 through their Diverse C-Terminal Domains

(2018) Nikhil Job et al.   PLANT PHYSIOLOGY

The Untapped Genetic Reservoir: The Past, Current, and Future Applications of the Wild Soybean (Glycine soja)

(2018) Janice Kofsky et al.   Frontiers in Plant Science

Two B-Box Domain Proteins, BBX18 and BBX23, Interact with ELF3 and Regulate Thermomorphogenesis in Arabidopsis

(2018) Lan Ding et al.   Cell Reports

The B-box bridge between light and hormones in plants

(2018) K.P. Vaishak et al.   JOURNAL OF PHOTOCHEMISTRY AND PHOTOBIOLOGY B-BIOLOGY

The G-Protein β Subunit AGB1 Promotes Hypocotyl Elongation through Inhibiting Transcription Activation Function of BBX21 in  Arabidopsis

(2017) Dong-bei Xu et al.   Molecular Plant

Soybean domestication: the origin, genetic architecture and molecular bases

(2017) Eric J. Sedivy et al.   NEW PHYTOLOGIST

The B-Box Domain Protein BBX21 Promotes Photomorphogenesis

(2017) Dongqing Xu et al.   PLANT PHYSIOLOGY

ABA-dependent control ofGIGANTEAsignalling enables drought escape via up-regulation ofFLOWERING LOCUS TinArabidopsis thaliana

(2016) Matteo Riboni et al.   JOURNAL OF EXPERIMENTAL BOTANY

ArabidopsisB-BOX32 interacts with CONSTANS-LIKE3 to regulate flowering

(2016) Prateek Tripathi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

BBX21, anArabidopsisB-box protein, directly activatesHY5and is targeted by COP1 for 26S proteasome-mediated degradation

(2016) Dongqing Xu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genomic Organization, Phylogenetic and Expression Analysis of the B-BOX Gene Family in Tomato

(2016) Zhuannan Chu et al.   Frontiers in Plant Science

Whole genome duplications in plants: an overview fromArabidopsis

(2015) Juan Carlos del Pozo et al.   JOURNAL OF EXPERIMENTAL BOTANY

The MEME Suite

(2015) Timothy L. Bailey et al.   NUCLEIC ACIDS RESEARCH

GSDS 2.0: an upgraded gene feature visualization server

(2014) Bo Hu et al.   BIOINFORMATICS

InterProScan 5: genome-scale protein function classification

(2014) P. Jones et al.   BIOINFORMATICS

The CONSTANS-like 4 transcription factor, AtCOL4, positively regulates abiotic stress tolerance through an abscisic acid-dependent manner inArabidopsis

(2014) Ji-Hee Min et al.   Journal of Integrative Plant Biology

Polyploidy-associated genome modifications during land plant evolution

(2014) Yuannian Jiao et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Cross-Family Translational Genomics of Abiotic Stress-Responsive Genes between Arabidopsis and Medicago truncatula

(2014) Daejin Hyung et al.   PLoS One

The BBX family of plant transcription factors

(2014) Sreeramaiah N. Gangappa et al.   TRENDS IN PLANT SCIENCE

Convergence of Light and ABA Signaling on the ABI5 Promoter

(2014) Dongqing Xu et al.   PLoS Genetics

Genomic differences between cultivated soybean, G. max and its wild relative G. soja

(2013) Trupti Joshi et al.   BMC GENOMICS

BBX proteins in green plants: Insights into their evolution, structure, feature and functional diversification

(2013) Carlos D. Crocco et al.   GENE

Tracing soybean domestication history: From nucleotide to genome

(2012) Moon Young Kim et al.   BREEDING SCIENCE

Evolutionary and comparative analyses of the soybean genome

(2012) Steven B. Cannon et al.   BREEDING SCIENCE

Arabidopsis STO/BBX24 negatively regulates UV-B signaling by interacting with COP1 and repressing HY5 transcriptional activity

(2012) Lei Jiang et al.   CELL RESEARCH

Expression of the Arabidopsis thaliana BBX32 Gene in Soybean Increases Grain Yield

(2012) Sasha B. Preuss et al.   PLoS One

The Rice B-Box Zinc Finger Gene Family: Genomic Identification, Characterization, Expression Profiling and Diurnal Analysis

(2012) Jianyan Huang et al.   PLoS One

Resolving the Ortholog Conjecture: Orthologs Tend to Be Weakly, but Significantly, More Similar in Function than Paralogs

(2012) Adrian M. Altenhoff et al.   PLoS Computational Biology

Contrasting patterns of evolution following whole genome versus tandem duplication events in Populus

(2011) E. Rodgers-Melnick et al.   GENOME RESEARCH

CONSTANS and the evolutionary origin of photoperiodic timing of flowering

(2011) F. Valverde   JOURNAL OF EXPERIMENTAL BOTANY

The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools

(2011) Philippe Lamesch et al.   NUCLEIC ACIDS RESEARCH

Genome sequence of the palaeopolyploid soybean

(2010) Jeremy Schmutz et al.   NATURE

AtBBX21 and COP1 genetically interact in the regulation of shade avoidance

(2010) Carlos D. Crocco et al.   PLANT JOURNAL

Whole-genome sequencing and intensive analysis of the undomesticated soybean (Glycine soja Sieb. and Zucc.) genome

(2010) M. Y. Kim et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Dating the origins of polyploidy events

(2009) Jeff J. Doyle et al.   NEW PHYTOLOGIST

The Arabidopsis B-Box Zinc Finger Family

(2009) R. Khanna et al.   PLANT CELL

How to usefully compare homologous plant genes and chromosomes as DNA sequences

(2008) Eric Lyons et al.   PLANT JOURNAL