Larger presence of ectomycorrhizae detected from pygmy pine ecotype in the fire-frequent pine barrens ecosystem

Fire as a driver of fungal diversity — A synthesis of current knowledge

(2022) Sam Fox et al.   MYCOLOGIA

DNA-Metabarcoding of Belowground Fungal Communities in Bare-Root Forest Nurseries: Focus on Different Tree Species

(2021) Diana Marčiulynienė et al.   Microorganisms

Fungal taxonomy and sequence-based nomenclature

(2021) Robert Lücking et al.   Nature Microbiology

The severity and extent of the Australia 2019–20 Eucalyptus forest fires are not the legacy of forest management

(2021) David M. J. S. Bowman et al.   Nature Ecology & Evolution

Understudied, underrepresented, and unknown: Methodological biases that limit detection of early diverging fungi from environmental samples

(2021) Nicole K. Reynolds et al.   Molecular Ecology Resources

Pine species determine fungal microbiome composition in a common garden experiment

(2021) Carmen Romeralo et al.   Fungal Ecology

A simple pyrocosm for studying soil microbial response to fire reveals a rapid, massive response by Pyronema species

(2020) Thomas D. Bruns et al.   PLoS One

How mycorrhizal associations drive plant population and community biology

(2020) Leho Tedersoo et al.   SCIENCE

Applying the core microbiome to understand host-microbe systems

(2020) Alice Risely   JOURNAL OF ANIMAL ECOLOGY

Plant–microbiome interactions: from community assembly to plant health

(2020) Pankaj Trivedi et al.   NATURE REVIEWS MICROBIOLOGY

Microbiome definition re-visited: old concepts and new challenges

(2020) Gabriele Berg et al.   Microbiome

Pygmaeomycetaceae, a new root-associated family in Mucoromycotina from the pygmy pine plains

(2020) Emily Walsh et al.   MYCOLOGIA

From Microbiome to Traits: Designing Synthetic Microbial Communities for Improved Crop Resiliency

(2020) Rafael Soares Correa de Souza et al.   Frontiers in Plant Science

Host-microbiota interactions: from holobiont theory to analysis

(2019) Jean-Christophe Simon et al.   Microbiome

A few Ascomycota taxa dominate soil fungal communities worldwide

(2019) Eleonora Egidi et al.   Nature Communications

Mucoromycotina fine root endophyte fungi form nutritional mutualisms with vascular plants

(2019) Grace Hoysted et al.   PLANT PHYSIOLOGY

Distribution patterns of fungal taxa and inferred functional traits reflect the non-uniform vertical stratification of soil microhabitats in a coastal pine forest

(2019) Kerri Kluting et al.   FEMS MICROBIOLOGY ECOLOGY

Notes, outline and divergence times of Basidiomycota

(2019) Mao-Qiang He et al.   FUNGAL DIVERSITY

Soil microbiomes and climate change

(2019) Janet K. Jansson et al.   NATURE REVIEWS MICROBIOLOGY

Sequence clustering threshold has little effect on the recovery of microbial community structure

(2018) Synnøve Smebye Botnen et al.   Molecular Ecology Resources

The Populus holobiont: dissecting the effects of plant niches and genotype on the microbiome

(2018) M. A. Cregger et al.   Microbiome

Belowground community responses to fire: meta-analysis reveals contrasting responses of soil microorganisms and mesofauna

(2018) Yamina Pressler et al.   OIKOS

The UNITE database for molecular identification of fungi: handling dark taxa and parallel taxonomic classifications

(2018) Rolf Henrik Nilsson et al.   NUCLEIC ACIDS RESEARCH

Simple statistical identification and removal of contaminant sequences in marker-gene and metagenomics data

(2018) Nicole M. Davis et al.   Microbiome

Root endophytic fungal communities associated with pitch pine, switchgrass, and rosette grass in the pine barrens ecosystem

(2017) Jing Luo et al.   Fungal Biology

Comparing diversity of fungi from living leaves using culturing and high-throughput environmental sequencing

(2017) Peter R. Johnston et al.   MYCOLOGIA

Fire Reduces Fungal Species Richness and In Situ Mycorrhizal Colonization: A Meta-Analysis

(2017) Nicholas C. Dove et al.   Fire Ecology

FUNGuild: An open annotation tool for parsing fungal community datasets by ecological guild

(2016) Nhu H. Nguyen et al.   Fungal Ecology

Open Nomenclature in the biodiversity era

(2016) Marco Sigovini et al.   Methods in Ecology and Evolution

Spatio-Temporal Variation of Core and Satellite Arbuscular Mycorrhizal Fungus Communities in Miscanthus giganteus

(2016) Christopher J. Barnes et al.   Frontiers in Microbiology

Getting the Hologenome Concept Right: an Eco-Evolutionary Framework for Hosts and Their Microbiomes

(2016) Kevin R. Theis et al.   mSystems

Five new Pseudophialophora species from grass roots in the oligotrophic pine barrens ecosystem

(2015) Jing Luo et al.   Fungal Biology

Barrenia , a new genus associated with roots of switchgrass and pine in the oligotrophic pine barrens

(2015) Emily Walsh et al.   Fungal Biology

Plant compartment and biogeography affect microbiome composition in cultivated and native Agave species

(2015) Devin Coleman-Derr et al.   NEW PHYTOLOGIST

Resilience of Arctic mycorrhizal fungal communities after wildfire facilitated by resprouting shrubs

(2014) Rebecca E. Hewitt et al.   ECOSCIENCE

Four new species in Magnaporthaceae from grass roots in New Jersey Pine Barrens

(2014) Jing Luo et al.   MYCOLOGIA

Acidomelania panicicola gen. et sp. nov. from switchgrass roots in acidic New Jersey pine barrens

(2014) Emily Walsh et al.   MYCOLOGIA

Leotia cf. lubrica forms arbutoid mycorrhiza with Comarostaphylis arbutoides (Ericaceae)

(2014) Katja Kühdorf et al.   MYCORRHIZA

Temperate Pine Barrens and Tropical Rain Forests Are Both Rich in Undescribed Fungi

(2014) Jing Luo et al.   PLoS One

Global diversity and geography of soil fungi

(2014) L. Tedersoo et al.   SCIENCE

The evolution of the New Jersey Pine Plains

(2013) F. Thomas Ledig et al.   AMERICAN JOURNAL OF BOTANY

Magnaporthiopsis, a new genus in Magnaporthaceae (Ascomycota)

(2013) Jing Luo et al.   MYCOLOGIA

Structure and phylogenetic diversity of post-fire ectomycorrhizal communities of maritime pine

(2013) A. Rincón et al.   MYCORRHIZA

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

Fungal systematics: is a new age of enlightenment at hand?

(2013) David S. Hibbett et al.   NATURE REVIEWS MICROBIOLOGY

Host Genotype Shapes the Foliar Fungal Microbiome of Balsam Poplar (Populus balsamifera)

(2013) Miklós Bálint et al.   PLoS One

A Multifactor Analysis of Fungal and Bacterial Community Structure in the Root Microbiome of Mature Populus deltoides Trees

(2013) Migun Shakya et al.   PLoS One

Illumina metabarcoding of a soil fungal community

(2013) Philipp-André Schmidt et al.   SOIL BIOLOGY & BIOCHEMISTRY

Mitigation of salt stress in wheat seedlings by halotolerant bacteria isolated from saline habitats

(2013) Dhanushkodi Ramadoss et al.   SpringerPlus

A survey of endophytic fungi of switchgrass (Panicum virgatum) in the Midwest, and their putative roles in plant growth

(2012) N.M. Kleczewski et al.   Fungal Ecology

High-Coverage ITS Primers for the DNA-Based Identification of Ascomycetes and Basidiomycetes in Environmental Samples

(2012) Hirokazu Toju et al.   PLoS One

Metagenomic biomarker discovery and explanation

(2011) Nicola Segata et al.   GENOME BIOLOGY

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Phylogenetic and ecological analyses of soil and sporocarp DNA sequences reveal high diversity and strong habitat partitioning in the boreal ectomycorrhizal genus Russula (Russulales; Basidiomycota)

(2010) József Geml et al.   NEW PHYTOLOGIST

Mechanisms underlying beneficial plant–fungus interactions in mycorrhizal symbiosis

(2010) Paola Bonfante et al.   Nature Communications

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

Analyzing salt-marsh fungal diversity: comparing ARISA fingerprinting with clone sequencing and pyrosequencing

(2009) Patrick M. Gillevet et al.   Fungal Ecology

Ectomycorrhizal root tips in relation to site and stand characteristics in Norway spruce and Scots pine stands in boreal forests

(2009) H.-S. Helmisaari et al.   TREE PHYSIOLOGY